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RPS20P14 ribosomal protein S20 pseudogene 14 [ Homo sapiens (human) ]

Gene ID: 440992, updated on 17-Sep-2024

Summary

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Official Symbol
RPS20P14provided by HGNC
Official Full Name
ribosomal protein S20 pseudogene 14provided by HGNC
Primary source
HGNC:HGNC:36692
See related
AllianceGenome:HGNC:36692
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS20_6_446
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Genomic context

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See RPS20P14 in Genome Data Viewer
Location:
3q27.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (186900076..186900593)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (189717863..189718380)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (186617865..186618382)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14988 Neighboring gene adiponectin enhancer region Neighboring gene MCF2L2 pseudogene 1 Neighboring gene ADIPOQ antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 6282 Neighboring gene adiponectin, C1Q and collagen domain containing Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:186582731-186583380 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:186586160-186586957 Neighboring gene CRISPRi-validated cis-regulatory element chr3.5443 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:186591921-186592909 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:186597846-186598346 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:186598347-186598847 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:186604299-186605262 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:186605263-186606225 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:186611033-186611552 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:186612594-186613114 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:186614677-186615197 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:186615198-186615717 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:186615718-186616238 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:186626722-186627417 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:186627418-186628112 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:186647930-186648538 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14990 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20946 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20947 Neighboring gene ribosomal protein L29 pseudogene 9 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:186659211-186659712 Neighboring gene ST6 beta-galactoside alpha-2,6-sialyltransferase 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:186673829-186674071 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:186674568-186675068 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20948 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:186681641-186682220 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:186693287-186694168 Neighboring gene uncharacterized LOC124906314 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20949 Neighboring gene Sharpr-MPRA regulatory region 11729

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. Choudhury NR, et al. BMC Biol, 2017 Nov 8. PMID 29117863, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_005532.5 

    Range
    101..618
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    186900076..186900593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    189717863..189718380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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