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RPL23AP65 ribosomal protein L23a pseudogene 65 [ Homo sapiens (human) ]

Gene ID: 440027, updated on 17-Sep-2024

Summary

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Official Symbol
RPL23AP65provided by HGNC
Official Full Name
ribosomal protein L23a pseudogene 65provided by HGNC
Primary source
HGNC:HGNC:36289
See related
Ensembl:ENSG00000243964 AllianceGenome:HGNC:36289
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL23A_27_1119
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Genomic context

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See RPL23AP65 in Genome Data Viewer
Location:
11p15.4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (9606123..9606662)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (9690283..9690822)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (9627670..9628209)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3126 Neighboring gene zinc finger protein 143 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3127 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:9537259-9537799 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:9551203-9551929 Neighboring gene CRISPRi-validated cis-regulatory element chr11.1006 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:9584901-9585400 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4409 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3128 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:9594443-9595295 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3131 Neighboring gene small nucleolar RNA U13 Neighboring gene WEE1 G2 checkpoint kinase Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3132 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3133 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4411 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4410 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4412 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:9622289-9622842 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:9631697-9632224 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4415 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3134 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4416 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4417 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4418 Neighboring gene uncharacterized LOC124902628 Neighboring gene ribosomal protein L21 pseudogene 97

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011129.2 

    Range
    101..640
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    9606123..9606662
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    9690283..9690822
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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