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Fam222a family with sequence similarity 222, member A [ Mus musculus (house mouse) ]

Gene ID: 433940, updated on 5-Mar-2024

Summary

Official Symbol
Fam222aprovided by MGI
Official Full Name
family with sequence similarity 222, member Aprovided by MGI
Primary source
MGI:MGI:3605543
See related
Ensembl:ENSMUSG00000041930 AllianceGenome:MGI:3605543
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in inner ear. Orthologous to human FAM222A (family with sequence similarity 222 member A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in adrenal adult (RPKM 28.4), ovary adult (RPKM 21.0) and 15 other tissues See more
Orthologs
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Genomic context

Location:
5 F; 5 55.99 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (114706312..114751281)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (114568251..114613220)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:114932816-114933017 Neighboring gene predicted gene, 34722 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:114955346-114955597 Neighboring gene STARR-seq mESC enhancer starr_14074 Neighboring gene STARR-seq mESC enhancer starr_14077 Neighboring gene predicted gene 13790 Neighboring gene STARR-positive B cell enhancer ABC_E8071 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:115047361-115047562 Neighboring gene predicted gene, 34844 Neighboring gene STARR-positive B cell enhancer ABC_E2757 Neighboring gene transient receptor potential cation channel, subfamily V, member 4 Neighboring gene STARR-positive B cell enhancer ABC_E9261 Neighboring gene STARR-seq mESC enhancer starr_14082 Neighboring gene glycolipid transfer protein

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

Clone Names

  • MGC67174

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004180.1NP_001004180.1  protein FAM222A

    See identical proteins and their annotated locations for NP_001004180.1

    Status: PROVISIONAL

    Source sequence(s)
    BC057022
    Consensus CDS
    CCDS19567.1
    UniProtKB/Swiss-Prot
    Q6PGH4
    Related
    ENSMUSP00000045724.8, ENSMUST00000043650.8
    Conserved Domains (1) summary
    pfam15258
    Location:35453
    FAM222A; Protein family of FAM222A

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    114706312..114751281
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006530401.5XP_006530464.1  protein FAM222A isoform X1

    See identical proteins and their annotated locations for XP_006530464.1

    UniProtKB/Swiss-Prot
    Q6PGH4
    Conserved Domains (1) summary
    pfam15258
    Location:35453
    FAM222A; Protein family of FAM222A