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LOC4324100 probable calcium-binding protein CML12 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324100, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4324100
Gene description
probable calcium-binding protein CML12
Locus tag
OSNPB_010604500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CML12
Expression
Broad expression in roots before flowering (RPKM 6.0), flowers (RPKM 1.2) and 4 other tissues See more
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (24385232..24386213, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (23810476..23811678, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene receptor-like protein EIX1 Neighboring gene receptor-like protein EIX2 Neighboring gene uncharacterized LOC4324099 Neighboring gene uncharacterized LOC4324101 Neighboring gene uncharacterized LOC4324102 Neighboring gene AAA-ATPase At3g50940 Neighboring gene uncharacterized LOC4324208

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in trans-Golgi network membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable calcium-binding protein CML12
Names
Calmodulin-like protein 12
LOC_Os01g41990
P0681B11.28

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    24385232..24386213 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026026975.2 → XP_025882760.1  probable calcium-binding protein CML12

    UniProtKB/Swiss-Prot
    B7EA40, Q5ZD81
    UniProtKB/TrEMBL
    A2WSC3
    Conserved Domains (1) summary
    PTZ00184
    Location:87 → 236
    PTZ00184; calmodulin; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZD81.1 GenPept UniProtKB/Swiss-Prot:Q5ZD81

Gene LinkOut

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Research Materials