camsap1.S calmodulin regulated spectrin associated protein 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: camsap1.S
Official Full Name: calmodulin regulated spectrin associated protein 1 S homeolog
Primary source: Xenbase:XB-GENE-940444
Locus tag: XELAEV_18041517mg
See related: EnsemblRapid:ENSXLAG00005011436
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: camsap1; camsap1.L
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Genomic context

Location:: chromosome: 8S

Exon count:: 19

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	8S	NC_054386.1 (28727552..28759074, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	8S	NC_030739.1 (28611360..28642348, complement)

Chromosome 8S - NC_054386.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables calmodulin binding	IEA Inferred from Electronic Annotation more info
enables microtubule binding	IEA Inferred from Electronic Annotation more info
enables microtubule binding	ISS Inferred from Sequence or Structural Similarity more info
enables microtubule minus-end binding	ISS Inferred from Sequence or Structural Similarity more info
enables spectrin binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cytoskeleton organization	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within microtubule cytoskeleton organization	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within neuron projection development	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within neuron projection development	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within regulation of cell morphogenesis	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within regulation of microtubule polymerization	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoskeleton	IEA Inferred from Electronic Annotation more info
located_in microtubule	IEA Inferred from Electronic Annotation more info
located_in microtubule	ISS Inferred from Sequence or Structural Similarity more info
colocalizes_with microtubule minus-end	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: calmodulin-regulated spectrin-associated protein 1

Names: calmodulin regulated spectrin associated protein 1 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001091488.1 → NP_001084957.1 calmodulin-regulated spectrin-associated protein 1

See identical proteins and their annotated locations for NP_001084957.1

Status: PROVISIONAL

Source sequence(s)

BC070721

UniProtKB/Swiss-Prot

Q6IRN6

UniProtKB/TrEMBL

A0A974C2A4

Related

ENSXLAP00005033446.1, ENSXLAT00005034285.1

Conserved Domains (5) summary

smart01051
Location:1437 → 1565

CAMSAP_CKK; Microtubule-binding calmodulin-regulated spectrin-associated

pfam11971
Location:230 → 313

CAMSAP_CH; CAMSAP CH domain

pfam15346
Location:1248 → 1325

ARGLU; Arginine and glutamate-rich 1

pfam17095
Location:846 → 904

CAMSAP_CC1; Spectrin-binding region of Ca2+-Calmodulin

cl23720
Location:1245 → 1325

RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

28727552..28759074 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041574173.1 → XP_041430107.1 calmodulin-regulated spectrin-associated protein 1 isoform X1

UniProtKB/TrEMBL

A0A8J1LKR0, A0A974C2A4

Related

ENSXLAP00005033443.1, ENSXLAT00005034282.1

Conserved Domains (4) summary

PTZ00121
Location:1169 → 1339

PTZ00121; MAEBL; Provisional

smart01051
Location:1448 → 1576

CAMSAP_CKK; Microtubule-binding calmodulin-regulated spectrin-associated

pfam11971
Location:241 → 324

CAMSAP_CH; CAMSAP CH domain

pfam09756
Location:1267 → 1341

DDRGK; DDRGK domain