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MFAP1 microfibril associated protein 1 [ Homo sapiens (human) ]

Gene ID: 4236, updated on 5-Jul-2020

Summary

Official Symbol
MFAP1provided by HGNC
Official Full Name
microfibril associated protein 1provided by HGNC
Primary source
HGNC:HGNC:7032
See related
Ensembl:ENSG00000140259 MIM:600215
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AMP
Expression
Ubiquitous expression in thyroid (RPKM 15.2), testis (RPKM 14.4) and 25 other tissues See more
Orthologs

Genomic context

See MFAP1 in Genome Data Viewer
Location:
15q15.3
Exon count:
9
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 15 NC_000015.10 (43804492..43824690, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (44096733..44116951, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene SERF2-C15orf63 readthrough Neighboring gene small EDRK-rich factor 2 Neighboring gene serine incorporator 4 Neighboring gene huntingtin interacting protein K Neighboring gene WD repeat domain 76 Neighboring gene FERM domain containing 5 Neighboring gene peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Rev rev HIV-1 Rev interacting protein, microfibrillar-associated protein 1 (MFAP1), is identified by the in-vitro binding experiments involving cytosolic or nuclear extracts from HeLa cells. The interaction of Rev with MFAP1 is increased by RRE PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA binding HDA PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mRNA splicing, via spliceosome IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
U2-type precatalytic spliceosome IDA
Inferred from Direct Assay
more info
PubMed 
U2-type spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
centrosome IDA
Inferred from Direct Assay
more info
 
extracellular region TAS
Traceable Author Statement
more info
 
microfibril IDA
Inferred from Direct Assay
more info
PubMed 
nucleoplasm IDA
Inferred from Direct Assay
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
microfibrillar-associated protein 1
Names
microfibrillar associated protein 1
spliceosome B complex protein MFAP1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_005926.3NP_005917.2  microfibrillar-associated protein 1

    See identical proteins and their annotated locations for NP_005917.2

    Status: VALIDATED

    Source sequence(s)
    AC018512, BC050742, BF981568
    Consensus CDS
    CCDS10105.1
    UniProtKB/Swiss-Prot
    P55081
    Related
    ENSP00000267812.3, ENST00000267812.4
    Conserved Domains (1) summary
    pfam06991
    Location:197399
    MFAP1; Microfibril-associated/Pre-mRNA processing

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p13 Primary Assembly

    Range
    43804492..43824690 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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