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RPL32 ribosomal protein L32 [ Sus scrofa (pig) ]

Gene ID: 414419, updated on 5-Mar-2024

Summary

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Gene symbol
RPL32
Gene description
ribosomal protein L32
See related
Ensembl:ENSSSCG00000035811
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 1000.4), spleen (RPKM 927.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (68788109..68793265, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (76057726..76061577, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene transmembrane protein 40 Neighboring gene cullin associated and neddylation dissociated 2 (putative) Neighboring gene EF-hand calcium binding domain 12 Neighboring gene methyl-CpG binding domain 4, DNA glycosylase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Evaluating a set of reference genes for expression normalization in multiple tissues and skeletal muscle at different development stages in pigs using quantitative real-time polymerase chain reaction. Zhang J, et al. DNA Cell Biol, 2012 Jan. PMID 21631284
  2. Evaluation and characterization of a porcine small intestine cDNA library: analysis of 839 clones. Wintero AK, et al. Mamm Genome, 1996 Jul. PMID 8672129
  3. Structure of the mammalian ribosome-Sec61 complex to 3.4 Å resolution. Voorhees RM, et al. Cell, 2014 Jun 19. PMID 24930395, Free PMC Article
  4. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data suggest the combination of three genes RPL32, RPS18, and H3F3A is the most suitable for accurate normalization.
    Title: Evaluating a set of reference genes for expression normalization in multiple tissues and skeletal muscle at different development stages in pigs using quantitative real-time polymerase chain reaction.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
large ribosomal subunit protein eL32; 60S ribosomal protein L32

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001636.1 → NP_001001636.1  large ribosomal subunit protein eL32

    See identical proteins and their annotated locations for NP_001001636.1

    Status: PROVISIONAL

    Source sequence(s)
    AY550039
    UniProtKB/Swiss-Prot
    Q29280, Q6QAT0
    UniProtKB/TrEMBL
    A0A8D1QF31
    Conserved Domains (1) summary
    pfam01655
    Location:17 → 124
    Ribosomal_L32e; Ribosomal protein L32

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    68788109..68793265 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021068582.1 → XP_020924241.1  60S ribosomal protein L32 isoform X1

    UniProtKB/Swiss-Prot
    Q29280, Q6QAT0
    UniProtKB/TrEMBL
    A0A8D1QF31
    Related
    ENSSSCP00000055017.1, ENSSSCT00000044760.3
    Conserved Domains (1) summary
    pfam01655
    Location:17 → 124
    Ribosomal_L32e; Ribosomal protein L32
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6QAT0.3 GenPept UniProtKB/Swiss-Prot:Q6QAT0

Gene LinkOut

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