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SMIM30 small integral membrane protein 30 [ Homo sapiens (human) ]

Gene ID: 401397, updated on 1-Jun-2020

Summary

Official Symbol
SMIM30provided by HGNC
Official Full Name
small integral membrane protein 30provided by HGNC
Primary source
HGNC:HGNC:48953
See related
Ensembl:ENSG00000214194
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00998
Expression
Ubiquitous expression in heart (RPKM 54.5), thyroid (RPKM 25.8) and 25 other tissues See more
Orthologs

Genomic context

See SMIM30 in Genome Data Viewer
Location:
7q31.1
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (113116718..113118582, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (112756773..112758637, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene heart tissue-associated transcript 17 Neighboring gene uncharacterized LOC107986837 Neighboring gene G protein-coupled receptor 85 Neighboring gene protein phosphatase 1 regulatory subunit 3A Neighboring gene VISTA enhancer hs720 Neighboring gene forkhead box P2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC104490, AC073346.2

Gene Ontology Provided by GOA

Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
small integral membrane protein 30
Names
long intergenic non-protein coding RNA 998
putative transmembrane protein LINC00998

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001352687.1NP_001339616.1  small integral membrane protein 30 precursor

    Status: VALIDATED

    Source sequence(s)
    BC107860, BQ446959, BU630382, DN995392
    Consensus CDS
    CCDS87543.1
    Related
    ENSP00000490064.1, ENST00000441359.1
    Conserved Domains (1) summary
    pfam15873
    Location:154
    DUF4730; Domain of unknown function (DUF4730)
  2. NM_001352688.2NP_001339617.1  small integral membrane protein 30 precursor

    Status: VALIDATED

    Source sequence(s)
    BU630382, BX537645
    Consensus CDS
    CCDS87543.1
    Related
    ENSP00000490095.1, ENST00000397764.8
    Conserved Domains (1) summary
    pfam15873
    Location:154
    DUF4730; Domain of unknown function (DUF4730)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    113116718..113118582 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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