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Smim30 small integral membrane protein 30 [ Mus musculus (house mouse) ]

Gene ID: 66520, updated on 26-Sep-2022

Summary

Official Symbol
Smim30provided by MGI
Official Full Name
small integral membrane protein 30provided by MGI
Primary source
MGI:MGI:1913770
See related
Ensembl:ENSMUSG00000052419 AllianceGenome:MGI:1913770
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2610001J05Rik
Summary
Orthologous to human SMIM30 (small integral membrane protein 30). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 22.1), limb E14.5 (RPKM 14.3) and 25 other tissues See more
Orthologs
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Genomic context

See Smim30 in Genome Data Viewer
Location:
6; 6 A1
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (13867734..13871517, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (13867735..13871518, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53312 Neighboring gene RIKEN cDNA 1110019D14 gene Neighboring gene G protein-coupled receptor 85 Neighboring gene predicted gene, 38767

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Clone Names

  • MGC99440

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
small integral membrane protein 30

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001352887.1NP_001339816.1  small integral membrane protein 30 precursor

    Status: VALIDATED

    Source sequence(s)
    AC113309, AK152937
    Consensus CDS
    CCDS90029.1
    UniProtKB/TrEMBL
    A0A8C6IKU2, F2Z3Y9
    Related
    ENSMUSP00000116702.2, ENSMUST00000139231.2
    Conserved Domains (1) summary
    pfam15873
    Location:154
    DUF4730; Domain of unknown function (DUF4730)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    13867734..13871517 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_183258.1: Suppressed sequence

    Description
    NM_183258.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.