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LINC01205 long intergenic non-protein coding RNA 1205 [ Homo sapiens (human) ]

Gene ID: 401082, updated on 23-Nov-2021

Summary

Official Symbol
LINC01205provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1205provided by HGNC
Primary source
HGNC:HGNC:49636
See related
Ensembl:ENSG00000228980
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01205 in Genome Data Viewer
Location:
3q13.13
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (109409990..109495167)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (109128837..109214014)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene developmental pluripotency associated 4 Neighboring gene chromosome 12 open reading frame 29 pseudogene Neighboring gene H3 histone pseudogene 12 Neighboring gene peptidylprolyl isomerase A pseudogene 15 Neighboring gene microRNA 4445 Neighboring gene DIM1 dimethyladenosine transferase 1 homolog pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.
EBI GWAS Catalog

General gene information

Markers

Clone Names

  • FLJ25363

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109841.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant This variant (2) uses several alternate exons at the 3' end resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC092905, AK058092
    Related
    ENST00000497996.1
  2. NR_109842.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC092905

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    109409990..109495167
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001145553.1: Suppressed sequence

    Description
    NM_001145553.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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