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C1orf220 chromosome 1 putative open reading frame 220 [ Homo sapiens (human) ]

Gene ID: 400798, updated on 13-May-2022

Summary

Official Symbol
C1orf220provided by HGNC
Official Full Name
chromosome 1 putative open reading frame 220provided by HGNC
Primary source
HGNC:HGNC:33805
See related
Ensembl:ENSG00000213057 AllianceGenome:HGNC:33805
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in lymph node (RPKM 1.7), spleen (RPKM 1.5) and 21 other tissues See more
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Genomic context

See C1orf220 in Genome Data Viewer
Location:
1q25.2
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (178542796..178548889)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (177897519..177903612)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (178511931..178518024)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371631 Neighboring gene uncharacterized LOC124904460 Neighboring gene uncharacterized LOC105371632 Neighboring gene RNA, 5S ribosomal pseudogene 69 Neighboring gene Sharpr-MPRA regulatory region 1317

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Discovery and refinement of loci associated with lipid levels.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033186.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK092849, AL513013, BC136727
    Related
    ENST00000521244.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    178542796..178548889
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    177897519..177903612
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207467.1: Suppressed sequence

    Description
    NM_207467.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.