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PCNX3 pecanex 3 [ Homo sapiens (human) ]

Gene ID: 399909, updated on 5-Aug-2018

Summary

Official Symbol
PCNX3provided by HGNC
Official Full Name
pecanex 3provided by HGNC
Primary source
HGNC:HGNC:18760
See related
Ensembl:ENSG00000197136 MIM:617657; Vega:OTTHUMG00000166539
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PCNXL3
Expression
Ubiquitous expression in testis (RPKM 9.4), spleen (RPKM 6.0) and 25 other tissues See more
Orthologs

Genomic context

See PCNX3 in Genome Data Viewer
Location:
11q13.1
Exon count:
38
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 11 NC_000011.10 (65614311..65637439)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (65383686..65404910)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene potassium two pore domain channel subfamily K member 7 Neighboring gene mitogen-activated protein kinase kinase kinase 11 Neighboring gene microRNA 4690 Neighboring gene signal-induced proliferation-associated 1 Neighboring gene microRNA 4489 Neighboring gene RELA proto-oncogene, NF-kB subunit

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • FLJ22427

Gene Ontology Provided by GOA

Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
pecanex-like protein 3
Names
pecanex homolog 3
pecanex homolog protein 3
pecanex-like 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_032223.3NP_115599.2  pecanex-like protein 3

    See identical proteins and their annotated locations for NP_115599.2

    Status: VALIDATED

    Source sequence(s)
    AA426047, AK026080, AP001362, BE735110, BU616089, BX640978, CA489689, CN262095, CN281656, DY654455, KF455405
    Consensus CDS
    CCDS44650.1
    UniProtKB/Swiss-Prot
    Q9H6A9
    Related
    ENSP00000347931.3, OTTHUMP00000233355, ENST00000355703.3, OTTHUMT00000390321
    Conserved Domains (1) summary
    pfam05041
    Location:15701795
    Pecanex_C; Pecanex protein (C-terminus)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p12 Primary Assembly

    Range
    65614311..65637439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011545024.2XP_011543326.1  pecanex-like protein 3 isoform X1

    See identical proteins and their annotated locations for XP_011543326.1

    Conserved Domains (1) summary
    pfam05041
    Location:15831808
    Pecanex_C; Pecanex protein (C-terminus)
  2. XM_005273990.5XP_005274047.1  pecanex-like protein 3 isoform X8

    Conserved Domains (2) summary
    PHA03247
    Location:194629
    PHA03247; large tegument protein UL36; Provisional
    COG1289
    Location:8501043
    YccC; Uncharacterized membrane protein YccC [Function unknown]
  3. XM_006718549.4XP_006718612.1  pecanex-like protein 3 isoform X3

    Conserved Domains (1) summary
    pfam05041
    Location:15771802
    Pecanex_C; Pecanex protein (C-terminus)
  4. XM_005273987.5XP_005274044.1  pecanex-like protein 3 isoform X2

    Conserved Domains (2) summary
    pfam05041
    Location:15821807
    Pecanex_C; Pecanex protein (C-terminus)
    cl21589
    Location:419626
    Relaxase; Relaxase/Mobilization nuclease domain
  5. XM_011545025.3XP_011543327.1  pecanex-like protein 3 isoform X4

    Conserved Domains (2) summary
    pfam05041
    Location:15831808
    Pecanex_C; Pecanex protein (C-terminus)
    cl21589
    Location:419622
    Relaxase; Relaxase/Mobilization nuclease domain
  6. XM_011545028.3XP_011543330.1  pecanex-like protein 3 isoform X7

    Conserved Domains (2) summary
    PHA03247
    Location:194629
    PHA03247; large tegument protein UL36; Provisional
    COG1289
    Location:8501043
    YccC; Uncharacterized membrane protein YccC [Function unknown]
  7. XM_011545026.3XP_011543328.1  pecanex-like protein 3 isoform X5

    Conserved Domains (1) summary
    pfam05041
    Location:9791204
    Pecanex_C; Pecanex protein (C-terminus)
  8. XM_011545027.1XP_011543329.1  pecanex-like protein 3 isoform X6

    Conserved Domains (1) summary
    pfam05041
    Location:8371062
    Pecanex_C; Pecanex protein (C-terminus)

RNA

  1. XR_002957146.1 RNA Sequence

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