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Pcnx3 pecanex homolog 3 [ Mus musculus (house mouse) ]

Gene ID: 104401, updated on 30-Apr-2024

Summary

Official Symbol
Pcnx3provided by MGI
Official Full Name
pecanex homolog 3provided by MGI
Primary source
MGI:MGI:1861733
See related
Ensembl:ENSMUSG00000054874 AllianceGenome:MGI:1861733
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Pcnxl3; mKIAA4073
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including alimentary system; central nervous system; eye; genitourinary system; and immune system. Orthologous to human PCNX3 (pecanex 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in thymus adult (RPKM 60.8), adrenal adult (RPKM 58.7) and 28 other tissues See more
Orthologs
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Genomic context

See Pcnx3 in Genome Data Viewer
Location:
19 A; 19 4.34 cM
Exon count:
35
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (5714663..5739036, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (5664635..5689003, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene v-rel reticuloendotheliosis viral oncogene homolog A (avian) Neighboring gene signal-induced proliferation associated gene 1 Neighboring gene microRNA 6987 Neighboring gene STARR-positive B cell enhancer ABC_E4259 Neighboring gene STARR-positive B cell enhancer ABC_E11012 Neighboring gene mitogen-activated protein kinase kinase kinase 11 Neighboring gene potassium channel, subfamily K, member 7 Neighboring gene EH domain binding protein 1-like 1 Neighboring gene family with sequence similarity 89, member B

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • KIAA4073

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
pecanex-like protein 3
Names
pecanex homolog protein 3
pecanex-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_144868.3NP_659117.2  pecanex-like protein 3

    See identical proteins and their annotated locations for NP_659117.2

    Status: VALIDATED

    Source sequence(s)
    BC096538, BE956025
    Consensus CDS
    CCDS29475.2
    UniProtKB/Swiss-Prot
    Q8VI59
    Related
    ENSMUSP00000109245.3, ENSMUST00000113615.9
    Conserved Domains (2) summary
    pfam05041
    Location:15701795
    Pecanex_C; Pecanex protein (C-terminus)
    cl21589
    Location:419622
    Relaxase; Relaxase/Mobilization nuclease domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    5714663..5739036 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006531613.5XP_006531676.1  pecanex-like protein 3 isoform X2

    Conserved Domains (3) summary
    PHA03247
    Location:194654
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:18652034
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05041
    Location:15821808
    Pecanex_C; Pecanex protein (C-terminus)
  2. XM_030250681.1XP_030106541.1  pecanex-like protein 3 isoform X7

    Conserved Domains (3) summary
    PHA03247
    Location:194654
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:18522021
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05041
    Location:15691795
    Pecanex_C; Pecanex protein (C-terminus)
  3. XM_006531612.4XP_006531675.1  pecanex-like protein 3 isoform X1

    Conserved Domains (3) summary
    PHA03247
    Location:194655
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:18662035
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05041
    Location:15831809
    Pecanex_C; Pecanex protein (C-terminus)
  4. XM_030250679.1XP_030106539.1  pecanex-like protein 3 isoform X4

    Conserved Domains (3) summary
    PHA03247
    Location:194654
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:18592028
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05041
    Location:15761802
    Pecanex_C; Pecanex protein (C-terminus)
  5. XM_011248596.4XP_011246898.1  pecanex-like protein 3 isoform X9

    Conserved Domains (3) summary
    PHA03247
    Location:194655
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:18432012
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05041
    Location:15601786
    Pecanex_C; Pecanex protein (C-terminus)
  6. XM_006531615.5XP_006531678.1  pecanex-like protein 3 isoform X8

    Conserved Domains (3) summary
    PHA03247
    Location:194655
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:18502019
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05041
    Location:15671793
    Pecanex_C; Pecanex protein (C-terminus)
  7. XM_011248595.4XP_011246897.1  pecanex-like protein 3 isoform X5

    Conserved Domains (3) summary
    PHA03247
    Location:194655
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:18562025
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05041
    Location:15731799
    Pecanex_C; Pecanex protein (C-terminus)
  8. XM_006531614.5XP_006531677.1  pecanex-like protein 3 isoform X3

    Conserved Domains (3) summary
    PHA03247
    Location:194655
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:18602029
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05041
    Location:15771803
    Pecanex_C; Pecanex protein (C-terminus)
  9. XM_030250682.2XP_030106542.1  pecanex-like protein 3 isoform X10

    Conserved Domains (3) summary
    PHA03247
    Location:194654
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:18422011
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05041
    Location:15591785
    Pecanex_C; Pecanex protein (C-terminus)
  10. XM_030250680.2XP_030106540.1  pecanex-like protein 3 isoform X6

    Conserved Domains (3) summary
    PHA03247
    Location:194654
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:18552024
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05041
    Location:15721798
    Pecanex_C; Pecanex protein (C-terminus)