Format

Send to:

Choose Destination

FAM102A family with sequence similarity 102 member A [ Homo sapiens (human) ]

Gene ID: 399665, updated on 10-Dec-2019

Summary

Official Symbol
FAM102Aprovided by HGNC
Official Full Name
family with sequence similarity 102 member Aprovided by HGNC
Primary source
HGNC:HGNC:31419
See related
Ensembl:ENSG00000167106 MIM:610891
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
EEIG1; SYM-3A; C9orf132; bA203J24.7
Expression
Ubiquitous expression in stomach (RPKM 55.4), small intestine (RPKM 33.1) and 25 other tissues See more
Orthologs

Genomic context

See FAM102A in Genome Data Viewer
Location:
9q34.11
Exon count:
11
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (127940582..127980989, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (130702861..130742812, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-4-phosphate 5-kinase like 1 Neighboring gene dolichyl-phosphate mannosyltransferase subunit 2, regulatory Neighboring gene Sharpr-MPRA regulatory region 6856 Neighboring gene conserved acetylation island sequence 15 enhancer Neighboring gene Sharpr-MPRA regulatory region 5179 Neighboring gene nuclear apoptosis inducing factor 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC50853

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
protein FAM102A
Names
C230093N12Rik
early estrogen-induced gene 1 protein
sym-3 homolog A

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001035254.3NP_001030331.1  protein FAM102A isoform a

    See identical proteins and their annotated locations for NP_001030331.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AK058004, AL157935, BC047949, BI008660, CN482844
    Consensus CDS
    CCDS35150.1
    UniProtKB/Swiss-Prot
    Q5T9C2
    Related
    ENSP00000362187.1, ENST00000373095.6
    Conserved Domains (1) summary
    pfam10358
    Location:12152
    NT-C2; N-terminal C2 in EEIG1 and EHBP1 proteins
  2. NM_203305.2NP_976050.1  protein FAM102A isoform b

    See identical proteins and their annotated locations for NP_976050.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding region compared to variant 1. The resulting isoform (b) is shorter at the N-terminus compared to isoform a.
    Source sequence(s)
    AL157935, BC047949, BI008660
    Consensus CDS
    CCDS6888.1
    UniProtKB/Swiss-Prot
    Q5T9C2
    Related
    ENSP00000362176.4, ENST00000373084.8

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    127940582..127980989 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center