yeats4.S YEATS domain containing 4 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: yeats4.S
Official Full Name: YEATS domain containing 4 S homeolog
Primary source: Xenbase:XB-GENE-956362
Locus tag: XELAEV_18021180mg
See related: EnsemblRapid:ENSXLAG00005021085
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: yeats4
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Genomic context

Location:: chromosome: 3S

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	3S	NC_054376.1 (89042239..89053026, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	3S	NC_030729.1 (87225266..87236053, complement)

Chromosome 3S - NC_054376.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in intracellular membrane-bounded organelle	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: YEATS domain containing 4 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001089937.1 → NP_001083406.1 YEATS domain containing 4 S homeolog

See identical proteins and their annotated locations for NP_001083406.1

Status: PROVISIONAL

Source sequence(s)

BC060411

UniProtKB/TrEMBL

A0A974DAY6, Q6PA89

Related

ENSXLAP00005061900.1, ENSXLAT00005063353.1

Conserved Domains (3) summary

pfam03366
Location:44 → 123

YEATS; YEATS family

pfam08172
Location:194 → 221

CASP_C; CASP C terminal

pfam11365
Location:158 → 219

DUF3166; Protein of unknown function (DUF3166)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

89042239..89053026 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041587557.1 → XP_041443491.1 YEATS domain containing 4 S homeolog isoform X1

UniProtKB/TrEMBL

A0A8J1MPX9

Related

ENSXLAP00005061928.1, ENSXLAT00005063378.1

Conserved Domains (2) summary

COG0444
Location:124 → 210

DppD; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism]

cd16909
Location:26 → 162

YEATS_GAS41_like; YEATS domain found in YEATS domain-containing protein 4 and similar proteins