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ocln.S occludin S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398133, updated on 18-Sep-2024

Summary

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Official Symbol
ocln.S
Official Full Name
occludin S homeolog
Primary source
Xenbase:XB-GENE-866529
Locus tag
XELAEV_18010862mg
See related
EnsemblRapid:ENSXLAG00005030563
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ocln; oclnb; ocln-a; ocln-b
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Genomic context

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Location:
chromosome: 1S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (170622155..170649978)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (154611616..154639602)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene adenylate kinase 6 S homeolog Neighboring gene MARVEL domain-containing protein 2-like Neighboring gene general transcription factor IIH subunit 2 S homeolog Neighboring gene survival of motor neuron 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Occludin dephosphorylation in early development of Xenopus laevis. Cordenonsi M, et al. J Cell Sci, 1997 Dec. PMID 9365283
  2. Xenopus laevis occludin. Identification of in vitro phosphorylation sites by protein kinase CK2 and association with cingulin. Cordenonsi M, et al. Eur J Biochem, 1999 Sep. PMID 10491082
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
occludin
Names
occludin b
XP_018089733.1
XP_018089737.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    170622155..170649978
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018234244.2 → XP_018089733.1  occludin isoform X1

    UniProtKB/TrEMBL
    A0A1L8HRB7, A0A974I2C2, B7ZQA0
    Related
    ENSXLAP00005091400.1, ENSXLAT00005093081.1

  2. XM_018234248.2 → XP_018089737.1  occludin isoform X2

    UniProtKB/TrEMBL
    A0A8J0TSX6, B7ZQA0
    Related
    ENSXLAP00005091454.1, ENSXLAT00005093134.1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001088474.1: Suppressed sequence

    Description
    NM_001088474.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9PUN1.1 GenPept UniProtKB/Swiss-Prot:Q9PUN1

Gene LinkOut

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