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ykt6.S YKT6 v-SNARE homolog S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398034, updated on 18-Sep-2024

Summary

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Official Symbol
ykt6.S
Official Full Name
YKT6 v-SNARE homolog S homeolog
Primary source
Xenbase:XB-GENE-949734
Locus tag
XELAEV_18020259mg
See related
EnsemblRapid:ENSXLAG00005018131
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ykt6; ykt6a; snare1; ykt6-a; ykt6-b
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Genomic context

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Location:
chromosome: 3S
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (26688951..26704843)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (25620244..25636180)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene glucokinase (hexokinase 4) S homeolog Neighboring gene transfer RNA proline (anticodon UGG) Neighboring gene NPC1 like 1 S homeolog Neighboring gene DEAD-box helicase 56 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and expression study of a Xenopus homologue of prenylated SNARE gene. Park HS, et al. Biochem Biophys Res Commun, 1998 Jul 20. PMID 9675119
  2. Protein interactomes of protein phosphatase 2A B55 regulatory subunits reveal B55-mediated regulation of replication protein A under replication stress. Wang F, et al. Sci Rep, 2018 Feb 8. PMID 29422626, Free PMC Article
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle membrane IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
synaptobrevin homolog YKT6-A
Names
isoprenylated v-SNARE protein
xsnare1
NP_001081758.1
XP_018109622.1
XP_018109623.1
XP_018109624.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001088289.1 → NP_001081758.1  synaptobrevin homolog YKT6-A

    See identical proteins and their annotated locations for NP_001081758.1

    Status: PROVISIONAL

    Source sequence(s)
    AF067648
    UniProtKB/Swiss-Prot
    Q6DDU7
    Related
    ENSXLAP00005053504.1, ENSXLAT00005054677.1
    Conserved Domains (3) summary
    COG5143
    Location:3 → 198
    SNC1; Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
    cd15867
    Location:136 → 195
    R-SNARE_YKT6; SNARE motif of YKT6
    pfam13774
    Location:44 → 107
    Longin; Regulated-SNARE-like domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    26688951..26704843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018254134.2 → XP_018109623.1  synaptobrevin homolog YKT6-A isoform X1

    UniProtKB/Swiss-Prot
    O73865, Q6DDU7
    UniProtKB/TrEMBL
    A0A974D6P5

  2. XM_018254135.2 → XP_018109624.1  synaptobrevin homolog YKT6-A isoform X1

    UniProtKB/Swiss-Prot
    O73865, Q6DDU7
    UniProtKB/TrEMBL
    A0A974D6P5

  3. XM_018254133.2 → XP_018109622.1  synaptobrevin homolog YKT6-A isoform X1

    UniProtKB/Swiss-Prot
    O73865, Q6DDU7
    UniProtKB/TrEMBL
    A0A974D6P5
    Related
    ENSXLAP00005053514.1, ENSXLAT00005054687.1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DDU7.1 GenPept UniProtKB/Swiss-Prot:Q6DDU7

Gene LinkOut

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