U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TBRG4 transforming growth factor beta regulator 4 [ Sus scrofa (pig) ]

Gene ID: 397641, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
TBRG4provided by VGNC
Official Full Name
transforming growth factor beta regulator 4provided by VGNC
Primary source
VGNC:VGNC:104068
See related
Ensembl:ENSSSCG00000016732
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
CPR2
Expression
Ubiquitous expression in ovary (RPKM 25.8), heart (RPKM 24.0) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 18
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 18 NC_010460.4 (50366896..50378086)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 18 NC_010460.3 (55197834..55209038)

Chromosome 18 - NC_010460.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110257536 Neighboring gene receptor activity modifying protein 3 Neighboring gene whey acidic protein Neighboring gene NAC alpha domain containing Neighboring gene uncharacterized LOC110257600 Neighboring gene CCM2 scaffold protein

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Pig whey acidic protein gene is surrounded by two ubiquitously expressed genes. Rival-Gervier S, et al. Biochim Biophys Acta, 2003 May 13. PMID 12759187
  2. Fast kinase domain-containing protein 3 is a mitochondrial protein essential for cellular respiration. Simarro M, et al. Biochem Biophys Res Commun, 2010 Oct 22. PMID 20869947, Free PMC Article
  3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mitochondrial mRNA stability IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribonucleoprotein granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
FAST kinase domain-containing protein 4; protein TBRG4
Names
cell cycle progression 2 protein
cell cycle progression protein 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123101.2 → NP_001116573.2  FAST kinase domain-containing protein 4

    Status: VALIDATED

    Source sequence(s)
    AEMK02000111, HX223867
    UniProtKB/TrEMBL
    A0A8D0QMD9, A0A8D1L6D9, A0A8D1TEY9, F1ST63
    Related
    ENSSSCP00000017731.2, ENSSSCT00000018223.4
    Conserved Domains (3) summary
    smart00952
    Location:564 → 621
    RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
    pfam06743
    Location:371 → 439
    FAST_1; FAST kinase-like protein, subdomain 1
    pfam08368
    Location:455 → 536
    FAST_2; FAST kinase-like protein, subdomain 2

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010460.4 Reference Sscrofa11.1 Primary Assembly

    Range
    50366896..50378086
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005673332.2 → XP_005673389.1  protein TBRG4 isoform X1

    See identical proteins and their annotated locations for XP_005673389.1

    UniProtKB/TrEMBL
    A0A8D0QMD9, A0A8D1L6D9, A0A8D1TEY9, F1ST63
    Conserved Domains (3) summary
    smart00952
    Location:564 → 621
    RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
    pfam06743
    Location:371 → 439
    FAST_1; FAST kinase-like protein, subdomain 1
    pfam08368
    Location:455 → 536
    FAST_2; FAST kinase-like protein, subdomain 2

  2. XM_005673333.3 → XP_005673390.1  protein TBRG4 isoform X1

    See identical proteins and their annotated locations for XP_005673390.1

    UniProtKB/TrEMBL
    A0A8D0QMD9, A0A8D1L6D9, A0A8D1TEY9, F1ST63
    Related
    ENSSSCP00000017723.3, ENSSSCT00000018214.4
    Conserved Domains (3) summary
    smart00952
    Location:564 → 621
    RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
    pfam06743
    Location:371 → 439
    FAST_1; FAST kinase-like protein, subdomain 1
    pfam08368
    Location:455 → 536
    FAST_2; FAST kinase-like protein, subdomain 2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7YS91.2 GenPept UniProtKB/Swiss-Prot:Q7YS91

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials