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NUDT16L1 nudix hydrolase 16 like 1 [ Gallus gallus (chicken) ]

Gene ID: 395557, updated on 17-Aug-2024

Summary

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Symbol
NUDT16L1provided by CGNC
Full Name
nudix hydrolase 16 like 1provided by CGNC
Primary source
CGNC:20168
See related
Ensembl:ENSGALG00010016756
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
SDOS
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
3
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 14 NC_052545.1 (12352132..12354585, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 14 NC_052586.1 (12347703..12350154, complement)

Chromosome 14 - NC_052545.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121106800 Neighboring gene C7orf26 homolog Neighboring gene N-alpha-acetyltransferase 60, NatF catalytic subunit Neighboring gene mahogunin ring finger 1 Neighboring gene microRNA 6714 Neighboring gene UBA like domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Syndesmos, a protein that interacts with the cytoplasmic domain of syndecan-4, mediates cell spreading and actin cytoskeletal organization. Baciu PC, et al. J Cell Sci, 2000 Jan. PMID 10633082
  2. Syndesmos, a syndecan-4 cytoplasmic domain interactor, binds to the focal adhesion adaptor proteins paxillin and Hic-5. Denhez F, et al. J Biol Chem, 2002 Apr 5. PMID 11805099
  3. Proteomic studies of Syk-interacting proteins using a novel amine-specific isotope tag and GFP nanotrap. Galan JA, et al. J Am Soc Mass Spectrom, 2011 Feb. PMID 21472591, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tudor-interacting repair regulator protein
Names
NUDT16-like protein 1
nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1
protein syndesmos
syndesmos

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204780.2 → NP_990111.1  tudor-interacting repair regulator protein

    See identical proteins and their annotated locations for NP_990111.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000257
    UniProtKB/Swiss-Prot
    Q9IAY5
    Related
    ENSGALP00010023438.1, ENSGALT00010040401.1

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052545.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    12352132..12354585 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040647317.2 → XP_040503251.1  tudor-interacting repair regulator protein isoform X1

    UniProtKB/TrEMBL
    A0A1L1RIX9
    Related
    ENSGALP00010023432.1, ENSGALT00010040392.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052586.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    12347703..12350154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046927285.1 → XP_046783241.1  tudor-interacting repair regulator protein isoform X1

    UniProtKB/TrEMBL
    A0A1L1RIX9
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9IAY5.3 GenPept UniProtKB/Swiss-Prot:Q9IAY5

Gene LinkOut

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Molecular Biology Databases
Research Materials