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MROH5 maestro heat like repeat family member 5 (gene/pseudogene) [ Homo sapiens (human) ]

Gene ID: 389690, updated on 13-Mar-2020

Summary

Official Symbol
MROH5provided by HGNC
Official Full Name
maestro heat like repeat family member 5 (gene/pseudogene)provided by HGNC
Primary source
HGNC:HGNC:42976
See related
Ensembl:ENSG00000226807
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 3.5) and heart (RPKM 0.2) See more
Orthologs

Genomic context

See MROH5 in Genome Data Viewer
Location:
8q24.3
Exon count:
31
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 8 NC_000008.11 (141433825..141507230, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (142443929..142517330, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375790 Neighboring gene protein tyrosine phosphatase 4A3 Neighboring gene VISTA enhancer hs1882 Neighboring gene uncharacterized LOC107983985 Neighboring gene uncharacterized LOC105375789 Neighboring gene heterogeneous nuclear ribonucleoprotein A1pseudogene 38 Neighboring gene CEB42 minisatellite repeat instability region Neighboring gene uncharacterized LOC105375791 Neighboring gene Sharpr-MPRA regulatory region 1869

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

HIV-1 interactions

Replication interactions

Interaction Pubs
Knockdown of FLJ43860 protein by siRNA inhibits HIV-1 replication in HeLa P4/R5 cells PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ43860

General protein information

Preferred Names
maestro heat-like repeat family member 5

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207414.2NP_997297.2  maestro heat-like repeat family member 5

    See identical proteins and their annotated locations for NP_997297.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1, coding) differs at a polymorphic nucleotide compared to the reference genome sequence and represents the protein coding allele.
    Source sequence(s)
    AC100803, AC138647, AK125848, AK131461, DB063153, DB070296, DN831584
    UniProtKB/Swiss-Prot
    Q6ZUA9
    UniProtKB/TrEMBL
    Q6ZMW9

RNA

  1. NR_102363.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two internal exons and uses two alternate splice sites, compared to variant 1. This variant is represented as non-coding because the use of the expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AC100803, AC138647, AK131461, BC144560, DB070296, DB072034, KF459918
    Related
    ENST00000521053.5
  2. NR_102364.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks four internal exons but it includes one additional exon, and it uses three alternate splice sites, compared to variant 1. This variant is represented as non-coding because the use of the expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AC100803, AC138647, AK131461, DB070296, DB072034, KF459918
    Related
    ENST00000523857.5
  3. NR_160399.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1, non-coding) contains a polymorphic nt that creates an early termination codon compared to variant 1, coding. The resulting transcript is considered to be non-protein coding since it is a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AC100803, AC138647, KF459654, KF459918
    Related
    ENST00000430863.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p13 Primary Assembly

    Range
    141433825..141507230 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187574.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    106281..123607 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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