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LYSMD1 LysM domain containing 1 [ Homo sapiens (human) ]

Gene ID: 388695, updated on 7-Jun-2020

Summary

Official Symbol
LYSMD1provided by HGNC
Official Full Name
LysM domain containing 1provided by HGNC
Primary source
HGNC:HGNC:32070
See related
Ensembl:ENSG00000163155
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SB145
Expression
Ubiquitous expression in spleen (RPKM 7.3), lymph node (RPKM 5.9) and 25 other tissues See more
Orthologs

Genomic context

See LYSMD1 in Genome Data Viewer
Location:
1q21.3
Exon count:
7
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (151148496..151165902, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (151132224..151138424, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene GA binding protein transcription factor subunit beta 2 Neighboring gene ribosomal protein S29 pseudogene 29 Neighboring gene semaphorin 6C Neighboring gene TNFAIP8L2-SCNM1 readthrough Neighboring gene TNF alpha induced protein 8 like 2 Neighboring gene sodium channel modifier 1 Neighboring gene tropomodulin 4 Neighboring gene vacuolar protein sorting 72 homolog

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC35223

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
nucleoplasm IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
lysM and putative peptidoglycan-binding domain-containing protein 1
Names
LysM, putative peptidoglycan-binding, domain containing 1
RP11-68I18.5

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001136543.2NP_001130015.1  lysM and putative peptidoglycan-binding domain-containing protein 1 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 5' coding region and uses an upstream start codon, compared to variant 1. Isoform b has a shorter N-terminus, compared to isoform a.
    Source sequence(s)
    AK298706, BX647911
    Consensus CDS
    CCDS44218.1
    UniProtKB/Swiss-Prot
    Q96S90
    Related
    ENSP00000404059.2, ENST00000440902.2
  2. NM_212551.5NP_997716.1  lysM and putative peptidoglycan-binding domain-containing protein 1 isoform a

    See identical proteins and their annotated locations for NP_997716.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
    Source sequence(s)
    AL592424, BX647911, DA176882
    Consensus CDS
    CCDS986.1
    UniProtKB/Swiss-Prot
    Q96S90
    Related
    ENSP00000357904.5, ENST00000368908.10
    Conserved Domains (1) summary
    cd00118
    Location:4284
    LysM; Lysine Motif is a small domain involved in binding peptidoglycan

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    151148496..151165902 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001737167.1 RNA Sequence

  2. XR_001737166.2 RNA Sequence

  3. XR_001737165.2 RNA Sequence

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