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Lysmd1 LysM, putative peptidoglycan-binding, domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 217779, updated on 30-Apr-2024

Summary

Official Symbol
Lysmd1provided by MGI
Official Full Name
LysM, putative peptidoglycan-binding, domain containing 1provided by MGI
Primary source
MGI:MGI:1919409
See related
Ensembl:ENSMUSG00000053769 AllianceGenome:MGI:1919409
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2610022K04Rik
Summary
Predicted to be located in nucleoplasm. Orthologous to human LYSMD1 (LysM domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E18 (RPKM 9.5), cerebellum adult (RPKM 8.6) and 28 other tissues See more
Orthologs
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Genomic context

See Lysmd1 in Genome Data Viewer
Location:
3 F2.1; 3 40.74 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (95041399..95046836)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (95134088..95139525)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting 72 Neighboring gene tropomodulin 4 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:94937828-94938011 Neighboring gene sodium channel modifier 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:94945477-94945712 Neighboring gene microRNA 8099-1 Neighboring gene tumor necrosis factor, alpha-induced protein 8-like 2 Neighboring gene predicted gene 9169 Neighboring gene STARR-seq mESC enhancer starr_08369 Neighboring gene sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC38837

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
lysM and putative peptidoglycan-binding domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_153121.2NP_694761.1  lysM and putative peptidoglycan-binding domain-containing protein 1

    See identical proteins and their annotated locations for NP_694761.1

    Status: VALIDATED

    Source sequence(s)
    AC131769, BC024838
    Consensus CDS
    CCDS17602.1
    UniProtKB/Swiss-Prot
    Q9D0E3
    UniProtKB/TrEMBL
    A6H624
    Related
    ENSMUSP00000067811.6, ENSMUST00000066386.6
    Conserved Domains (2) summary
    cd00118
    Location:4284
    LysM; Lysine Motif is a small domain involved in binding peptidoglycan
    COG1388
    Location:4282
    LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    95041399..95046836
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)