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BTBD17 BTB domain containing 17 [ Homo sapiens (human) ]

Gene ID: 388419, updated on 1-Jun-2020

Summary

Official Symbol
BTBD17provided by HGNC
Official Full Name
BTB domain containing 17provided by HGNC
Primary source
HGNC:HGNC:33758
See related
Ensembl:ENSG00000204347
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BTBD17A; TANGO10A; LGALS3BPL
Expression
Biased expression in brain (RPKM 2.8), stomach (RPKM 0.2) and 1 other tissue See more
Orthologs

Genomic context

See BTBD17 in Genome Data Viewer
Location:
17q25.1
Exon count:
6
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (74356416..74363655, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (72352555..72357958, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene dynein axonemal intermediate chain 2 Neighboring gene uncharacterized LOC105371891 Neighboring gene uncharacterized LOC107985078 Neighboring gene kinesin family member 19 Neighboring gene G protein-coupled receptor 142 Neighboring gene RNA, 5S ribosomal pseudogene 448

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
negative regulation of viral genome replication ISS
Inferred from Sequence or Structural Similarity
more info
 
response to virus ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
colocalizes_with cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 
plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
BTB/POZ domain-containing protein 17
Names
BTB (POZ) domain containing 17
BTB/POZ and BACK domain-containing protein LOC388419
transport and golgi organization 10 homolog A

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080466.2NP_001073935.1  BTB/POZ domain-containing protein 17 precursor

    See identical proteins and their annotated locations for NP_001073935.1

    Status: VALIDATED

    Source sequence(s)
    AC103809
    Consensus CDS
    CCDS32719.1
    UniProtKB/Swiss-Prot
    A6NE02
    Related
    ENSP00000364515.3, ENST00000375366.4
    Conserved Domains (3) summary
    smart00225
    Location:64162
    BTB; Broad-Complex, Tramtrack and Bric a brac
    smart00875
    Location:169267
    BACK; BTB And C-terminal Kelch
    pfam00651
    Location:53158
    BTB; BTB/POZ domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    74356416..74363655 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017024622.1XP_016880111.1  BTB/POZ domain-containing protein 17 isoform X1

    Conserved Domains (3) summary
    smart00225
    Location:65163
    BTB; Broad-Complex, Tramtrack and Bric a brac
    smart00875
    Location:170268
    BACK; BTB And C-terminal Kelch
    pfam00651
    Location:54159
    BTB; BTB/POZ domain
  2. XM_011524791.2XP_011523093.1  BTB/POZ domain-containing protein 17 isoform X1

    See identical proteins and their annotated locations for XP_011523093.1

    Conserved Domains (3) summary
    smart00225
    Location:65163
    BTB; Broad-Complex, Tramtrack and Bric a brac
    smart00875
    Location:170268
    BACK; BTB And C-terminal Kelch
    pfam00651
    Location:54159
    BTB; BTB/POZ domain
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