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CCDC9B coiled-coil domain containing 9B [ Homo sapiens (human) ]

Gene ID: 388115, updated on 6-Nov-2022

Summary

Official Symbol
CCDC9Bprovided by HGNC
Official Full Name
coiled-coil domain containing 9Bprovided by HGNC
Primary source
HGNC:HGNC:33488
See related
Ensembl:ENSG00000188549 AllianceGenome:HGNC:33488
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C15orf52
Summary
Enables RNA binding activity. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in thyroid (RPKM 12.1), heart (RPKM 11.6) and 24 other tissues See more
Orthologs
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Genomic context

See CCDC9B in Genome Data Viewer
Location:
15q15.1
Exon count:
11
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (40331452..40340939, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (38138324..38147811, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (40623653..40633140, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268152 Neighboring gene ribosomal protein lateral stalk subunit P0 pseudogene 10 Neighboring gene InaF motif containing 2 Neighboring gene Sharpr-MPRA regulatory region 6286 Neighboring gene RNA, 5S ribosomal pseudogene 392 Neighboring gene proline, histidine and glycine rich 1 Neighboring gene uncharacterized LOC124903472 Neighboring gene dispatched RND transporter family member 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ43339, DKFZp686N1468

General protein information

Preferred Names
coiled-coil domain-containing protein 9B
Names
uncharacterized protein C15orf52

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207380.3NP_997263.3  coiled-coil domain-containing protein 9B

    Status: VALIDATED

    Source sequence(s)
    AC013356
    Consensus CDS
    CCDS10055.3
    Related
    ENSP00000380670.3, ENST00000397536.7
    Conserved Domains (1) summary
    pfam15266
    Location:139305
    DUF4594; Domain of unknown function (DUF4594)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    40331452..40340939 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    38138324..38147811 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)