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Ccdc9b coiled-coil domain containing 9B [ Mus musculus (house mouse) ]

Gene ID: 214239, updated on 4-Nov-2022

Summary

Official Symbol
Ccdc9bprovided by MGI
Official Full Name
coiled-coil domain containing 9Bprovided by MGI
Primary source
MGI:MGI:2685199
See related
Ensembl:ENSMUSG00000045838 AllianceGenome:MGI:2685199
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm353; A430105I19Rik
Summary
Is expressed in heart. Orthologous to human CCDC9B (coiled-coil domain containing 9B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in lung adult (RPKM 9.6), bladder adult (RPKM 6.8) and 22 other tissues See more
Orthologs
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Genomic context

See Ccdc9b in Genome Data Viewer
Location:
2; 2 E5
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (118584626..118593421, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (118754145..118762947, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene phospholipase C, beta 2 Neighboring gene InaF motif containing 2 Neighboring gene predicted gene, 54146 Neighboring gene proline/histidine/glycine-rich 1 Neighboring gene dispatched RND tramsporter family member 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
coiled-coil domain-containing protein 9B
Names
uncharacterized protein C15orf52 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001982.3NP_001001982.3  coiled-coil domain-containing protein 9B

    Status: VALIDATED

    Source sequence(s)
    AL772255
    Consensus CDS
    CCDS50670.1
    UniProtKB/TrEMBL
    A0A8Q0K7A4
    Related
    ENSMUSP00000051853.10, ENSMUST00000059997.10

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    118584626..118593421 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006499105.5XP_006499168.1  coiled-coil domain-containing protein 9B isoform X1

    Conserved Domains (1) summary
    pfam15266
    Location:129303
    DUF4594; Domain of unknown function (DUF4594)
  2. XM_011239421.4XP_011237723.1  coiled-coil domain-containing protein 9B isoform X2

    Conserved Domains (1) summary
    pfam15266
    Location:186285
    DUF4594; Domain of unknown function (DUF4594)

RNA

  1. XR_374437.5 RNA Sequence