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Stpg2 sperm tail PG rich repeat containing 2 [ Mus musculus (house mouse) ]

Gene ID: 381476, updated on 5-Mar-2024

Summary

Official Symbol
Stpg2provided by MGI
Official Full Name
sperm tail PG rich repeat containing 2provided by MGI
Primary source
MGI:MGI:2685863
See related
Ensembl:ENSMUSG00000047940 AllianceGenome:MGI:2685863
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1017; B930007M17Rik
Summary
Orthologous to human STPG2 (sperm tail PG-rich repeat containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 2.1) and genital fat pad adult (RPKM 0.1) See more
Orthologs
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Genomic context

See Stpg2 in Genome Data Viewer
Location:
3 H1; 3 64.68 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (138910953..139415185)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (139205893..139710299)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene RAP1, GTP-GDP dissociation stimulator 1 Neighboring gene synaptic nuclear envelope 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_09125 Neighboring gene STARR-positive B cell enhancer ABC_E6140 Neighboring gene STARR-seq mESC enhancer starr_09128 Neighboring gene STARR-positive B cell enhancer ABC_E7946 Neighboring gene predicted gene 4862 Neighboring gene STARR-positive B cell enhancer ABC_E3476 Neighboring gene predicted gene, 24260 Neighboring gene STARR-seq mESC enhancer starr_09129 Neighboring gene STARR-seq mESC enhancer starr_09131 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene STARR-seq mESC enhancer starr_09132 Neighboring gene predicted gene, 32693 Neighboring gene STARR-seq mESC enhancer starr_09133 Neighboring gene STARR-seq mESC enhancer starr_09134 Neighboring gene microRNA 7j

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
sperm-tail PG-rich repeat-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198659.3NP_941061.1  sperm-tail PG-rich repeat-containing protein 2

    See identical proteins and their annotated locations for NP_941061.1

    Status: VALIDATED

    Source sequence(s)
    AC110257, AC113307, AC120880, AC121279, AC166913
    Consensus CDS
    CCDS17871.1
    UniProtKB/Swiss-Prot
    B2RQW3, Q8C8J0
    Related
    ENSMUSP00000051539.7, ENSMUST00000062306.7

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    138910953..139415185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036163146.1XP_036019039.1  sperm-tail PG-rich repeat-containing protein 2 isoform X1

    Related
    ENSMUSP00000101846.2, ENSMUST00000106239.8