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STPG2 sperm tail PG-rich repeat containing 2 [ Homo sapiens (human) ]

Gene ID: 285555, updated on 11-Sep-2019

Summary

Official Symbol
STPG2provided by HGNC
Official Full Name
sperm tail PG-rich repeat containing 2provided by HGNC
Primary source
HGNC:HGNC:28712
See related
Ensembl:ENSG00000163116
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C4orf37
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See STPG2 in Genome Data Viewer
Location:
4q22.3-q23
Exon count:
16
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (97184113..98143486, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (98480025..99064391, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2267 Neighboring gene RN7SK pseudogene 28 Neighboring gene cytochrome c oxidase subunit 7A2 pseudogene 2 Neighboring gene STPG2 antisense RNA 1 Neighboring gene crystallin zeta pseudogene 2 Neighboring gene ribosomal protein L5 pseudogene 12 Neighboring gene uncharacterized LOC105377340 Neighboring gene deoxyuridine triphosphatase pseudogene 8 Neighboring gene Rap1 GTPase-GDP dissociation stimulator 1 Neighboring gene ribosomal protein L21 pseudogene 48

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC46496

General protein information

Preferred Names
sperm-tail PG-rich repeat-containing protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_174952.3NP_777612.1  sperm-tail PG-rich repeat-containing protein 2

    See identical proteins and their annotated locations for NP_777612.1

    Status: VALIDATED

    Source sequence(s)
    AC019077, AC034154, BC036870
    Consensus CDS
    CCDS3645.1
    UniProtKB/Swiss-Prot
    Q8N412
    Related
    ENSP00000295268.3, ENST00000295268.4

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    97184113..98143486 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024454012.1XP_024309780.1  sperm-tail PG-rich repeat-containing protein 2 isoform X2

  2. XM_017008049.2XP_016863538.1  sperm-tail PG-rich repeat-containing protein 2 isoform X3

  3. XM_011531886.3XP_011530188.1  sperm-tail PG-rich repeat-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_011530188.1

  4. XM_017008051.2XP_016863540.1  sperm-tail PG-rich repeat-containing protein 2 isoform X4

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