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Spata22 spermatogenesis associated 22 [ Mus musculus (house mouse) ]

Gene ID: 380709, updated on 8-Feb-2024

Summary

Official Symbol
Spata22provided by MGI
Official Full Name
spermatogenesis associated 22provided by MGI
Primary source
MGI:MGI:2685728
See related
Ensembl:ENSMUSG00000112920 AllianceGenome:MGI:2685728
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm882
Summary
Acts upstream of or within several processes, including fertilization; meiosis I cell cycle process; and regulation of meiotic cell cycle. Located in chromosome. Is expressed in ileum; male reproductive gland or organ; and ovary. Orthologous to human SPATA22 (spermatogenesis associated 22). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in liver E18 (RPKM 2.2), testis adult (RPKM 1.9) and 6 other tissues See more
Orthologs
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Genomic context

See Spata22 in Genome Data Viewer
Location:
11 B4; 11 45.29 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (73217416..73237447)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (73326560..73346592)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel, subfamily V, member 1 Neighboring gene STARR-seq mESC enhancer starr_29931 Neighboring gene transient receptor potential cation channel, subfamily V, member 3 Neighboring gene STARR-seq mESC enhancer starr_29933 Neighboring gene STARR-seq mESC enhancer starr_29936 Neighboring gene aspartoacylase Neighboring gene olfactory receptor family 1 subfamily E member 1 Neighboring gene olfactory receptor family 1 subfamily E member 1C

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Chemically induced (ENU) (2)  1 citation
  • Endonuclease-mediated (1) 

General protein information

Preferred Names
spermatogenesis-associated protein 22

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045531.1NP_001038996.1  spermatogenesis-associated protein 22

    See identical proteins and their annotated locations for NP_001038996.1

    Status: VALIDATED

    Source sequence(s)
    AL645739
    Consensus CDS
    CCDS36219.1
    UniProtKB/Swiss-Prot
    Q5SV06
    UniProtKB/TrEMBL
    B0QZP0, B2KFD7
    Related
    ENSMUSP00000090602.5, ENSMUST00000092926.11

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    73217416..73237447
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011249097.3XP_011247399.1  spermatogenesis-associated protein 22 isoform X1

    See identical proteins and their annotated locations for XP_011247399.1

    UniProtKB/Swiss-Prot
    Q5SV06
    UniProtKB/TrEMBL
    B0QZP0, B2KFD7
  2. XM_011249095.3XP_011247397.1  spermatogenesis-associated protein 22 isoform X1

    See identical proteins and their annotated locations for XP_011247397.1

    UniProtKB/Swiss-Prot
    Q5SV06
    UniProtKB/TrEMBL
    B0QZP0, B2KFD7
  3. XM_011249096.4XP_011247398.1  spermatogenesis-associated protein 22 isoform X1

    See identical proteins and their annotated locations for XP_011247398.1

    UniProtKB/Swiss-Prot
    Q5SV06
    UniProtKB/TrEMBL
    B0QZP0, B2KFD7