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rpsa.S ribosomal protein SA S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380422, updated on 17-Aug-2024

Summary

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Official Symbol
rpsa.S
Official Full Name
ribosomal protein SA S homeolog
Primary source
Xenbase:XB-GENE-972241
Locus tag
XELAEV_18025548mg
See related
EnsemblRapid:ENSXLAG00005006661
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
LR; lrp; p40; rpsa; 37lrp; lambr; lamr1
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Genomic context

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Location:
chromosome: 4S
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (94256810..94262992, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (87928747..87934934, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene LUC7-like 2 pre-mRNA splicing factor S homeolog Neighboring gene RNA binding fox-1 homolog 2 S homeolog Neighboring gene small nucleolar RNA SNORA62/SNORA6 family Neighboring gene small nucleolar RNA SNORA62/SNORA6 family Neighboring gene small nucleolar RNA SNORA62/SNORA6 family Neighboring gene solute carrier family 25 member 38 S homeolog Neighboring gene myosin, heavy chain 9, non-muscle S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC53465

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables laminin binding IEA
Inferred from Electronic Annotation
more info
  
enables laminin receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ribosomal small subunit assembly IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  
part_of small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ribosomal protein SA S homeolog
Names
37-kd LR
67-kd LR
laminin receptor 1 (ribosomal protein SA, 67 kDA)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087261.1 → NP_001080730.1  ribosomal protein SA S homeolog

    See identical proteins and their annotated locations for NP_001080730.1

    Status: PROVISIONAL

    Source sequence(s)
    BC046271
    UniProtKB/TrEMBL
    A0A974HLY4, A0A974HMF9, Q7ZX07
    Related
    ENSXLAP00005019729.1, ENSXLAT00005020088.1
    Conserved Domains (3) summary
    PTZ00254
    Location:1 → 248
    PTZ00254; 40S ribosomal protein SA; Provisional
    TIGR01012
    Location:10 → 206
    uS2_euk_arch; ribosomal protein uS2, eukaryotic/archaeal form
    pfam16122
    Location:202 → 306
    40S_SA_C; 40S ribosomal protein SA C-terminus

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    94256810..94262992 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018259422.2 → XP_018114911.1  ribosomal protein SA S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0UZG1, A0A974HMF9
    Related
    ENSXLAP00005019759.1, ENSXLAT00005020125.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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