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transferases/nucleotidyltransferase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 3770677, updated on 18-Sep-2024

Summary

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Official Full Name
transferases/nucleotidyltransferase
Primary source
TAIR:AT5G19485
Locus tag
AT5G19485
See related
Araport:AT5G19485
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 5
Exon count:
13
Sequence:
Chromosome: 5; NC_003076.8 (6573592..6576534, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene nudix hydrolase homolog 24 Neighboring gene RPM1-interacting protein 4 (RIN4) family protein Neighboring gene mediator of RNA polymerase II transcription subunit Neighboring gene Histone superfamily protein Neighboring gene Tryptophan/tyrosine permease Neighboring gene Translation elongation factor EF1B/ribosomal protein S6 family protein Neighboring gene mechanosensitive channel of small conductance-like 9 Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036831.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transferases/nucleotidyltransferase
NP_001031908.1
  • transferases;nucleotidyltransferases; FUNCTIONS IN: transferase activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzyme (TAIR:AT2G34970.1); Has 6119 Blast hits to 5902 proteins in 1501 species: Archae - 491; Bacteria - 3115; Metazoa - 435; Fungi - 482; Plants - 325; Viruses - 0; Other Eukaryotes - 1271 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6573592..6576534 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001036831.4 → NP_001031908.1  transferases/nucleotidyltransferase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031908.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UAI1, A0A5S9Y5K1, Q1G3F7
    Conserved Domains (3) summary
    cd04652
    Location:367 → 447
    LbH_eIF2B_gamma_C; eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is ...
    cd04198
    Location:3 → 220
    eIF-2B_gamma_N; The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2
    COG1208
    Location:4 → 442
    GCD1; NDP-sugar pyrophosphorylase, includes eIF-2Bgamma, eIF-2Bepsilon, and LPS biosynthesis proteins [Translation, ribosomal structure and biogenesis, Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
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