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LCR13 low-molecular-weight cysteine-rich 13 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 3770466, updated on 7-Sep-2023

Summary

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Gene symbol
LCR13
Gene description
low-molecular-weight cysteine-rich 13
Primary source
Araport:AT4G09795
Locus tag
AT4G09795
See related
TAIR:AT4G09795
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
low-molecular-weight cysteine-rich 13
Summary
Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.
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Genomic context

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See LCR13 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (6169600..6170015)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene histone deacetylase Neighboring gene miscRNA Neighboring gene S18 ribosomal protein Neighboring gene Nucleotide-sugar transporter family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
low-molecular-weight cysteine-rich 13
NP_001031606.1
  • low-molecular-weight cysteine-rich 13 (LCR13); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 28 (TAIR:AT5G42797.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    6169600..6170015
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001036529.2 → NP_001031606.1  low-molecular-weight cysteine-rich 13 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031606.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P82728
    UniProtKB/TrEMBL
    A0A5S9XSL7
    Conserved Domains (1) summary
    pfam07333
    Location:20 → 77
    SLR1-BP; S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P82728.1

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