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GUSBP4 GUSB pseudogene 4 [ Homo sapiens (human) ]

Gene ID: 375513, updated on 23-Nov-2021

Summary

Official Symbol
GUSBP4provided by HGNC
Official Full Name
GUSB pseudogene 4provided by HGNC
Primary source
HGNC:HGNC:18220
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GUSBL2; SMA3-L; SMAC3L; C6orf216
Expression
Ubiquitous expression in ovary (RPKM 4.4), endometrium (RPKM 4.1) and 25 other tissues See more
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Genomic context

See GUSBP4 in Genome Data Viewer
Location:
6p11.2
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (57908553..57936929, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (58234831..58263207, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375101 Neighboring gene tRNA-Met (anticodon CAT) 7-1 Neighboring gene uncharacterized LOC101927268 Neighboring gene LINC00680-GUSBP4 readthrough Neighboring gene long intergenic non-protein coding RNA 680 Neighboring gene uncharacterized LOC101927293 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene 15

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • XXbac-BPGBPG55C20.2
  • glucuronidase, beta pseudogene 4
  • glucuronidase, beta-like 2
  • spinal muscular atrophy candidate gene 3-like

Clone Names

  • FLJ13549, FLJ23038, DKFZp547L1213

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132999.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL021368, AW955360, DB060896
  2. NR_133000.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 3' terminal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AL021368, DB060896

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    57908553..57936929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_206908.2: Suppressed sequence

    Description
    NM_206908.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
  2. NM_206910.1: Suppressed sequence

    Description
    NM_206910.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
  3. NM_206912.1: Suppressed sequence

    Description
    NM_206912.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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