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LINC00680 long intergenic non-protein coding RNA 680 [ Homo sapiens (human) ]

Gene ID: 106660612, updated on 23-Nov-2021

Summary

Official Symbol
LINC00680provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 680provided by HGNC
Primary source
HGNC:HGNC:44417
See related
Ensembl:ENSG00000215190
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in endometrium (RPKM 2.1), brain (RPKM 2.1) and 25 other tissues See more
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Genomic context

See LINC00680 in Genome Data Viewer
Location:
6p11.2
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (57945834..57961446, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (58272112..58287724, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927268 Neighboring gene LINC00680-GUSBP4 readthrough Neighboring gene GUSB pseudogene 4 Neighboring gene uncharacterized LOC101927293 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene 15 Neighboring gene SUMO specific peptidase 6 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125727.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the reference transcript.
    Source sequence(s)
    AL021368, AL162041, BC011838, BI756196, CA334877
    Related
    ENST00000418368.1
  2. NR_125728.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AL021368, AL162041, AL541195, BC011838, CA334877, DA613065
  3. NR_125729.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate internal exon and uses an alternate splice site, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AL021368, AL162041, BC011838, BC017330, CA334877
    Related
    ENST00000450081.5
  4. NR_132994.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate internal splice site, resulting in a longer transcript, compared to variant 1.
    Source sequence(s)
    AK023611, AL021368, AL162041, BC065547
  5. NR_132995.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) uses an alternate internal splice site, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AL021368, AL162041, BC011838
    Related
    ENST00000399751.6
  6. NR_132996.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) lacks two alternate internal exons, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AK023611, AL021368, AL162041, BE885753

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    57945834..57961446 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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