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Fam76a family with sequence similarity 76, member A [ Rattus norvegicus (Norway rat) ]

Gene ID: 362618, updated on 17-Aug-2024

Summary

Symbol
Fam76aprovided by RGD
Full Name
family with sequence similarity 76, member Aprovided by RGD
Primary source
RGD:1305162
See related
EnsemblRapid:ENSRNOG00000011254 AllianceGenome:RGD:1305162
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1305162
Summary
Predicted to be located in nucleoplasm. Orthologous to human FAM76A (family with sequence similarity 76 member A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Lung (RPKM 95.5), Spleen (RPKM 94.5) and 9 other tissues See more
Orthologs
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Genomic context

See Fam76a in Genome Data Viewer
Location:
5q36
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (150391460..150419526, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (145107491..145135734, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (151087962..151117142, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 8 Neighboring gene small Cajal body-specific RNA 1 Neighboring gene syntaxin 12 Neighboring gene uncharacterized LOC120102995 Neighboring gene uncharacterized LOC108351145 Neighboring gene FGR proto-oncogene, Src family tyrosine kinase

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108686.1NP_001102156.1  protein FAM76A

    See identical proteins and their annotated locations for NP_001102156.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473968
    UniProtKB/TrEMBL
    A0A8I6AL70, A6ISV3, D3ZEU8
    Related
    ENSRNOP00000062982.5, ENSRNOT00000066549.5
    Conserved Domains (1) summary
    pfam16046
    Location:4292
    FAM76; FAM76 protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    150391460..150419526 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039110401.2XP_038966329.1  protein FAM76A isoform X1

    UniProtKB/TrEMBL
    A0A8I6AL70, A0A8I6ALI1
    Related
    ENSRNOP00000094130.1, ENSRNOT00000093927.2
    Conserved Domains (1) summary
    pfam16046
    Location:4263
    FAM76; FAM76 protein