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Fam76a family with sequence similarity 76, member A [ Mus musculus (house mouse) ]

Gene ID: 230789, updated on 27-Nov-2024

Summary

Official Symbol
Fam76aprovided by MGI
Official Full Name
family with sequence similarity 76, member Aprovided by MGI
Primary source
MGI:MGI:2385211
See related
Ensembl:ENSMUSG00000028878 AllianceGenome:MGI:2385211
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in nucleoplasm. Predicted to be active in nuclear speck. Is expressed in embryo. Orthologous to human FAM76A (family with sequence similarity 76 member A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in testis adult (RPKM 26.9), bladder adult (RPKM 9.4) and 27 other tissues See more
Orthologs
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Genomic context

See Fam76a in Genome Data Viewer
Location:
4 D2.3; 4 66.01 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (132626524..132649849, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (132899213..132922760, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene syntaxin 12 Neighboring gene prostaglandin-endoperoxide synthase 2 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E2716 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:132500014-132500167 Neighboring gene STARR-positive B cell enhancer ABC_E9242 Neighboring gene predicted gene, 36518 Neighboring gene STARR-seq mESC enhancer starr_11587 Neighboring gene STARR-seq mESC enhancer starr_11589 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:132531847-132532036 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:132533610-132533847 Neighboring gene FGR proto-oncogene, Src family tyrosine kinase Neighboring gene STARR-seq mESC enhancer starr_11591

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163792.2NP_001157264.1  protein FAM76A isoform B

    Status: VALIDATED

    Source sequence(s)
    AL671190
    Consensus CDS
    CCDS51320.1
    UniProtKB/Swiss-Prot
    Q922G2
    Related
    ENSMUSP00000095468.4, ENSMUST00000097856.10
    Conserved Domains (1) summary
    pfam16046
    Location:4263
    FAM76; FAM76 protein
  2. NM_001426077.1NP_001413006.1  protein FAM76A isoform C

    Status: VALIDATED

    Source sequence(s)
    AL671190
  3. NM_001426078.1NP_001413007.1  protein FAM76A isoform D

    Status: VALIDATED

    Source sequence(s)
    AL671190
  4. NM_001426079.1NP_001413008.1  protein FAM76A isoform E

    Status: VALIDATED

    Source sequence(s)
    AL671190
  5. NM_145553.3NP_663528.1  protein FAM76A isoform A

    See identical proteins and their annotated locations for NP_663528.1

    Status: VALIDATED

    Source sequence(s)
    AL671190
    Consensus CDS
    CCDS18738.1
    UniProtKB/Swiss-Prot
    A2ADS2, Q3U3U8, Q3V3N2, Q922G2
    Related
    ENSMUSP00000030696.5, ENSMUST00000030696.11
    Conserved Domains (1) summary
    pfam16046
    Location:4292
    FAM76; FAM76 protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    132626524..132649849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)