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AFUA_3G13280 DEAD/DEAH box helicase (Sbp4), putative [ Aspergillus fumigatus Af293 ]

Gene ID: 3511733, updated on 31-Jan-2024

Summary

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Gene symbol
AFUA_3G13280
Gene description
DEAD/DEAH box helicase (Sbp4), putative
Locus tag
AFUA_3G13280
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus fumigatus Af293 (strain: Af293)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Fumigati
Old locus tag
Afu3g13280
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_007196.1 (3523585..3525629)

Chromosome 3 - NC_007196.1Genomic Context describing neighboring genes Neighboring gene Rad2-like endonuclease, putative Neighboring gene phosphatidate cytidylyltransferase, putative Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007196.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nierman WC, et al. Nature, 2005 Dec 22. PMID 16372009

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DEAD/DEAH box helicase (Sbp4), putative
XP_754294.1
  • encoded by transcript AFUA_3G13280A

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007196.1 Reference assembly

    Range
    3523585..3525629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_749201.1 → XP_754294.1  DEAD/DEAH box helicase (Sbp4), putative [Aspergillus fumigatus Af293]

    See identical proteins and their annotated locations for XP_754294.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q4WYJ7
    UniProtKB/TrEMBL
    A0A229W8Q4, B0XWH3
    Conserved Domains (5) summary
    smart00487
    Location:32 → 252
    DEXDc; DEAD-like helicases superfamily
    cd00079
    Location:282 → 400
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:21 → 249
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam13959
    Location:455 → 509
    DUF4217; Domain of unknown function (DUF4217)
    cl15166
    Location:531 → 626
    RRP7_like; RRP7 domain ribosomal RNA-processing protein 7 (Rrp7p), ribosomal RNA-processing protein 7 homolog A (Rrp7A), and similar proteins
Nucleotide Protein
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