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LINC01140 long intergenic non-protein coding RNA 1140 [ Homo sapiens (human) ]

Gene ID: 339524, updated on 11-Jun-2021

Summary

Official Symbol
LINC01140provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1140provided by HGNC
Primary source
HGNC:HGNC:27922
See related
Ensembl:ENSG00000267272
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in fat (RPKM 5.3), ovary (RPKM 2.7) and 21 other tissues See more
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Genomic context

See LINC01140 in Genome Data Viewer
Location:
1p22.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (87129765..87169204)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (87595448..87634887)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene selenoprotein F Neighboring gene heparan sulfate 2-O-sulfotransferase 1 Neighboring gene ubiquitin like modifier activating enzyme 2 pseudogene Neighboring gene ubiquitin like modifier activating enzyme 2 pseudogene Neighboring gene long intergenic non-protein coding RNA 2801 Neighboring gene VISTA enhancer hs809 Neighboring gene LIM domain only 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

Associated conditions

Description Tests
Genome-wide and candidate gene association study of cigarette smoking behaviors.
GeneReviews: Not available

General gene information

Markers

Potential readthrough

Included gene: HS2ST1

Clone Names

  • FLJ11317, MGC161518

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026985.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL139139, BC041867, DB462107
    Related
    ENST00000590653.5
  2. NR_026986.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon, compared to variant 1.
    Source sequence(s)
    AL139139, BC041867, DA398164, DB462107
  3. NR_026987.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate exon and uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AL139139, BC041867, DB100426, DB462107
  4. NR_026988.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) represents use of an alternate promoter and 5' exon, compared to variant 1.
    Source sequence(s)
    AL139139, BC041867, BI818944, DA981741
  5. NR_026989.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) represents use of an alternate promoter and alternate 5' and 3' exons, compared to variant 1.
    Source sequence(s)
    AL139139, BM679066, BM722117, DA981741
    Related
    ENST00000490006.6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    87129765..87169204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207357.1: Suppressed sequence

    Description
    NM_207357.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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