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H2BP1 H2B histone pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 337875, updated on 11-Sep-2019

Summary

Official Symbol
H2BP1provided by HGNC
Official Full Name
H2B histone pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:20560
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HIST2H2BA
Summary
Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is a histone pseudogene found on chromosome 1. [provided by RefSeq, Oct 2015]
Expression
Broad expression in ovary (RPKM 2.4), prostate (RPKM 2.1) and 20 other tissues See more

Genomic context

See H2BP1 in Genome Data Viewer
Location:
1p11.2
Exon count:
3
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (121107175..121117292, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (120906034..120914842)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2 D4 pseudogene Neighboring gene H3 histone pseudogene 4 Neighboring gene uncharacterized LOC100996318 Neighboring gene Fc fragment of IgG receptor Ib Neighboring gene ribosomal protein L22 pseudogene 6 Neighboring gene family with sequence similarity 72 member B

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • histone 2, H2ba
  • histone cluster 2 H2B family member a (pseudogene)
  • histone cluster 2, H2ba (pseudogene)

Clone Names

  • MGC126029, MGC126031

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027337.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC244453
  2. NR_160942.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC244453
  3. NR_160944.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC244453

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    121107175..121117292 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_002621.1: Suppressed sequence

    Description
    NG_002621.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
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