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si:ch211-154o6.4 si:ch211-154o6.4 [ Danio rerio (zebrafish) ]

Gene ID: 335834, updated on 27-Mar-2024

Summary

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Official Symbol
si:ch211-154o6.4provided by ZNC
Official Full Name
si:ch211-154o6.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-7777
See related
Ensembl:ENSDARG00000099965 AllianceGenome:ZFIN:ZDB-GENE-030131-7777
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj34b09; wu:fj34b09
Summary
Predicted to act upstream of or within regulation of immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in habenula. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See si:ch211-154o6.4 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (21737897..21747769)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (21933590..21943960)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 384 b Neighboring gene si:ch211-154o6.3 Neighboring gene COP9 constitutive photomorphogenic homolog subunit 7A Neighboring gene C-type lectin domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Identification of the zebrafish ventral habenula as a homolog of the mammalian lateral habenula. Amo R, et al. J Neurosci, 2010 Jan 27. PMID 20107084, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within regulation of immune response IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PILR alpha-associated neural protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080986.1 → NP_001074455.1  PILR alpha-associated neural protein precursor

    See identical proteins and their annotated locations for NP_001074455.1

    Status: PROVISIONAL

    Source sequence(s)
    BX294670
    UniProtKB/TrEMBL
    Q1LXQ2
    Related
    ENSDARP00000133450.1, ENSDART00000163688.2

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    21737897..21747769
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021466635.1 → XP_021322310.1  PILR alpha-associated neural protein isoform X1

    UniProtKB/TrEMBL
    A0A8M9PM93

  2. XM_009292223.3 → XP_009290498.1  PILR alpha-associated neural protein isoform X2

    UniProtKB/TrEMBL
    A0A8M3AJ15

  3. XM_021466636.1 → XP_021322311.1  PILR alpha-associated neural protein isoform X3

    UniProtKB/TrEMBL
    A0A8M9PJB0

  4. XM_017351323.2 → XP_017206812.1  PILR alpha-associated neural protein isoform X3

    UniProtKB/TrEMBL
    A0A8M9PJB0

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394960.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    118330..125498
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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