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Cdv3 carnitine deficiency-associated gene expressed in ventricle 3 [ Mus musculus (house mouse) ]

Gene ID: 321022, updated on 26-Mar-2024

Summary

Official Symbol
Cdv3provided by MGI
Official Full Name
carnitine deficiency-associated gene expressed in ventricle 3provided by MGI
Primary source
MGI:MGI:2448759
See related
Ensembl:ENSMUSG00000032803 AllianceGenome:MGI:2448759
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
TPP36; 2510010F10Rik; C230084J24Rik
Summary
Located in cytoplasm. Orthologous to human CDV3 (CDV3 homolog). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis adult (RPKM 32.7), CNS E11.5 (RPKM 31.8) and 28 other tissues See more
Orthologs
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Genomic context

See Cdv3 in Genome Data Viewer
Location:
9 F1; 9 55.26 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (103230301..103243034, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (103353102..103365835, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_25089 Neighboring gene predicted gene, 31701 Neighboring gene inhibitor of carbonic anhydrase Neighboring gene STARR-seq mESC enhancer starr_25090 Neighboring gene topoisomerase (DNA) II binding protein 1 Neighboring gene STARR-positive B cell enhancer ABC_E573 Neighboring gene STARR-seq mESC enhancer starr_25091 Neighboring gene RIKEN cDNA 5830418P13 gene Neighboring gene STARR-positive B cell enhancer mm9_chr9:103327280-103327581 Neighboring gene STARR-seq mESC enhancer starr_25093 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:103334789-103334972 Neighboring gene STARR-positive B cell enhancer ABC_E5098 Neighboring gene STARR-seq mESC enhancer starr_25094 Neighboring gene STARR-seq mESC enhancer starr_25095 Neighboring gene beaded filament structural protein 2, phakinin Neighboring gene predicted gene 16252 Neighboring gene transmembrane protein 108

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
protein CDV3
Names
carnitine deficiency-associated protein 3
carnitine deficiency-associated protein CDV3A
carnitine deficiency-associated protein CDV3B
tyrosine-phosphorylated protein 36

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134426.1NP_001127898.1  protein CDV3 isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1, resulting in a shorter protein (isoform c).
    Source sequence(s)
    AC122747
    Consensus CDS
    CCDS81064.1
    UniProtKB/TrEMBL
    A0A087WNP6
    Related
    ENSMUSP00000139440.2, ENSMUST00000189896.2
    Conserved Domains (1) summary
    pfam15359
    Location:106224
    CDV3; Carnitine deficiency-associated protein 3
  2. NM_001134427.1NP_001127899.1  protein CDV3 isoform d

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate exon in the 5' region, compared to variant 1, resulting in a protein with a shorter N-terminus (isoform d).
    Source sequence(s)
    AC122747
    Consensus CDS
    CCDS52902.1
    UniProtKB/TrEMBL
    F8WGL9
    Related
    ENSMUSP00000112216.3, ENSMUST00000116517.9
    Conserved Domains (1) summary
    pfam15359
    Location:197
    CDV3; Carnitine deficiency-associated protein 3
  3. NM_175565.3NP_780774.1  protein CDV3 isoform a

    See identical proteins and their annotated locations for NP_780774.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant represents the longest transcript and encodes the longest isoform (a), also known as CDV3A.
    Source sequence(s)
    AC122747, AF215660, AI851067
    Consensus CDS
    CCDS40748.1
    UniProtKB/Swiss-Prot
    Q4VAA2
    Related
    ENSMUSP00000072101.7, ENSMUST00000072249.13
    Conserved Domains (1) summary
    pfam15359
    Location:106224
    CDV3; Carnitine deficiency-associated protein 3
  4. NM_175833.2NP_787027.1  protein CDV3 isoform b

    See identical proteins and their annotated locations for NP_787027.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1, resulting in a longer protein (isoform b), also known as CDV3B.
    Source sequence(s)
    AC122747, AI851067, BC052770
    Consensus CDS
    CCDS23454.1
    UniProtKB/Swiss-Prot
    Q4VAA2, Q6P6L7, Q920C7, Q920I4
    Related
    ENSMUSP00000044420.4, ENSMUST00000035484.11
    Conserved Domains (1) summary
    pfam15359
    Location:106224
    CDV3; Carnitine deficiency-associated protein 3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    103230301..103243034 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006511756.1XP_006511819.1  protein CDV3 isoform X1

    Conserved Domains (1) summary
    pfam15359
    Location:106224
    CDV3; Carnitine deficiency-associated protein 3
  2. XM_006511758.5XP_006511821.1  protein CDV3 isoform X2

    UniProtKB/TrEMBL
    A0A087WS49
    Related
    ENSMUSP00000140900.2, ENSMUST00000190226.7
    Conserved Domains (1) summary
    pfam15359
    Location:197
    CDV3; Carnitine deficiency-associated protein 3