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CDV3 CDV3 homolog [ Homo sapiens (human) ]

Gene ID: 55573, updated on 13-Mar-2020

Summary

Official Symbol
CDV3provided by HGNC
Official Full Name
CDV3 homologprovided by HGNC
Primary source
HGNC:HGNC:26928
See related
Ensembl:ENSG00000091527 MIM:618789
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
H41
Expression
Ubiquitous expression in lymph node (RPKM 58.2), appendix (RPKM 45.7) and 25 other tissues See more
Orthologs

Genomic context

See CDV3 in Genome Data Viewer
Location:
3q22.1
Exon count:
8
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (133573629..133590274)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (133292434..133309118)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene beaded filament structural protein 2 Neighboring gene BFSP2 antisense RNA 1 Neighboring gene MAF1 homolog (S. cerevisiae) pseudogene Neighboring gene DNA topoisomerase II binding protein 1 Neighboring gene RNA, U6 small nuclear 678, pseudogene Neighboring gene transferrin

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Pr55(Gag) gag Cellular biotinylated CDV3 mouse homolog protein is incorporated into HIV-1 Gag virus-like particles PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
 
plasma membrane IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
protein CDV3 homolog
Names
carnitine deficiency-associated gene expressed in ventricle 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134422.2NP_001127894.1  protein CDV3 homolog isoform a

    See identical proteins and their annotated locations for NP_001127894.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes isoform a.
    Source sequence(s)
    AK096865, BC007338, BM676291, BP336445, CB268158, CR991255
    Consensus CDS
    CCDS46917.1
    UniProtKB/Swiss-Prot
    Q9UKY7
    Related
    ENSP00000391955.2, ENST00000431519.6
    Conserved Domains (1) summary
    pfam15359
    Location:81201
    CDV3; Carnitine deficiency-associated protein 3
  2. NM_001134423.2NP_001127895.1  protein CDV3 homolog isoform c

    See identical proteins and their annotated locations for NP_001127895.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in its 5' UTR, uses an alternate in-frame splice site in the 3' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (c) is shorter, compared to isoform a.
    Source sequence(s)
    AC016255, AK096865, BG773216, BM676291
    Consensus CDS
    CCDS46918.1
    UniProtKB/Swiss-Prot
    Q9UKY7
    Related
    ENSP00000413272.2, ENST00000420115.6
    Conserved Domains (1) summary
    pfam15359
    Location:199
    CDV3; Carnitine deficiency-associated protein 3
  3. NM_001282762.2NP_001269691.1  protein CDV3 homolog isoform d

    See identical proteins and their annotated locations for NP_001269691.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) has multiple differences in its UTRs and the coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (d) has a shorter N-terminus and distinct C-terminus, compared to isoform a. Both variants 4 and 5 encode the same isoform.
    Source sequence(s)
    AC016255, AF103803, AK096865, BM676291, BM798790, DA949679
    Consensus CDS
    CCDS75013.1
    UniProtKB/Swiss-Prot
    Q9UKY7
    UniProtKB/TrEMBL
    D6R9V8
    Conserved Domains (1) summary
    pfam15359
    Location:199
    CDV3; Carnitine deficiency-associated protein 3
  4. NM_001282763.1NP_001269692.1  protein CDV3 homolog isoform d

    See identical proteins and their annotated locations for NP_001269692.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) has multiple differences in its UTRs and the coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (d) has a shorter N-terminus and distinct C-terminus, compared to isoform a. Both variants 4 and 5 encode the same isoform.
    Source sequence(s)
    AC016255, AF103803, AK096865, BG773216, BM676291
    Consensus CDS
    CCDS75013.1
    UniProtKB/Swiss-Prot
    Q9UKY7
    UniProtKB/TrEMBL
    D6R9V8
    Related
    ENSP00000422866.1, ENST00000508481.5
    Conserved Domains (1) summary
    pfam15359
    Location:199
    CDV3; Carnitine deficiency-associated protein 3
  5. NM_001282764.1NP_001269693.1  protein CDV3 homolog isoform e

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) has multiple differences in its UTRs and the coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (e) has a shorter N-terminus and distinct C-terminus, compared to isoform a.
    Source sequence(s)
    AC016255, AK096865, BG773216, BM676291, BP215961, DB455474
    Consensus CDS
    CCDS75014.1
    UniProtKB/Swiss-Prot
    Q9UKY7
    UniProtKB/TrEMBL
    D6RFH2
    Related
    ENSP00000421495.1, ENST00000515421.1
    Conserved Domains (1) summary
    pfam15359
    Location:199
    CDV3; Carnitine deficiency-associated protein 3
  6. NM_001282765.1NP_001269694.1  protein CDV3 homolog isoform f

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) differs in its 5' UTR, uses two alternate in-frame splice sites in the 3' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (f) is shorter, compared to isoform a.
    Source sequence(s)
    AC016255, AK096865, BG773216, BM676291, BP215961, DB066830, DB455474
    Consensus CDS
    CCDS75015.1
    UniProtKB/Swiss-Prot
    Q9UKY7
    UniProtKB/TrEMBL
    D6RDN0
    Related
    ENSP00000425297.1, ENST00000511392.5
    Conserved Domains (1) summary
    pfam15359
    Location:197
    CDV3; Carnitine deficiency-associated protein 3
  7. NM_017548.5NP_060018.1  protein CDV3 homolog isoform b

    See identical proteins and their annotated locations for NP_060018.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 3'-terminal exon, compared to variant 1. The encoded isoform (b) has a longer and distinct C-terminus, compared to isoform a.
    Source sequence(s)
    AF103803, AK096865, BM676291, BM798790, BP336445
    Consensus CDS
    CCDS3079.1
    UniProtKB/Swiss-Prot
    Q9UKY7
    Related
    ENSP00000264993.3, ENST00000264993.7
    Conserved Domains (1) summary
    pfam15359
    Location:81201
    CDV3; Carnitine deficiency-associated protein 3

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    133573629..133590274
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005247588.5XP_005247645.1  protein CDV3 homolog isoform X1

    Conserved Domains (1) summary
    pfam15359
    Location:81201
    CDV3; Carnitine deficiency-associated protein 3
  2. XM_011512961.3XP_011511263.1  protein CDV3 homolog isoform X4

    Conserved Domains (1) summary
    pfam15359
    Location:81201
    CDV3; Carnitine deficiency-associated protein 3
  3. XM_005247591.5XP_005247648.1  protein CDV3 homolog isoform X5

    Conserved Domains (1) summary
    pfam15359
    Location:81201
    CDV3; Carnitine deficiency-associated protein 3
  4. XM_005247589.5XP_005247646.1  protein CDV3 homolog isoform X2

    Conserved Domains (1) summary
    pfam15359
    Location:81200
    CDV3; Carnitine deficiency-associated protein 3
  5. XM_005247590.5XP_005247647.1  protein CDV3 homolog isoform X3

    Conserved Domains (1) summary
    pfam15359
    Location:81200
    CDV3; Carnitine deficiency-associated protein 3
  6. XM_017006808.1XP_016862297.1  protein CDV3 homolog isoform X8

  7. XM_005247592.4XP_005247649.1  protein CDV3 homolog isoform X6

    See identical proteins and their annotated locations for XP_005247649.1

    Conserved Domains (1) summary
    pfam15359
    Location:199
    CDV3; Carnitine deficiency-associated protein 3
  8. XM_024453637.1XP_024309405.1  protein CDV3 homolog isoform X9

    Conserved Domains (1) summary
    pfam15359
    Location:199
    CDV3; Carnitine deficiency-associated protein 3
  9. XM_011512962.2XP_011511264.1  protein CDV3 homolog isoform X6

    See identical proteins and their annotated locations for XP_011511264.1

    Conserved Domains (1) summary
    pfam15359
    Location:199
    CDV3; Carnitine deficiency-associated protein 3
  10. XM_005247594.5XP_005247651.1  protein CDV3 homolog isoform X7

    See identical proteins and their annotated locations for XP_005247651.1

    Conserved Domains (1) summary
    pfam15359
    Location:198
    CDV3; Carnitine deficiency-associated protein 3
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