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Trappc11 trafficking protein particle complex 11 [ Mus musculus (house mouse) ]

Gene ID: 320714, updated on 8-Feb-2024

Summary

Official Symbol
Trappc11provided by MGI
Official Full Name
trafficking protein particle complex 11provided by MGI
Primary source
MGI:MGI:2444585
See related
Ensembl:ENSMUSG00000038102 AllianceGenome:MGI:2444585
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D030016E14Rik
Summary
Predicted to be involved in several processes, including constitutive secretory pathway; endoplasmic reticulum to Golgi vesicle-mediated transport; and regulation of protein complex stability. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi apparatus. Predicted to be part of TRAPP complex. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2S. Orthologous to human TRAPPC11 (trafficking protein particle complex subunit 11). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E14 (RPKM 14.7), CNS E18 (RPKM 14.2) and 28 other tissues See more
Orthologs
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Genomic context

See Trappc11 in Genome Data Viewer
Location:
8 B1.1; 8 26.86 cM
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (47943163..47986505, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (47490128..47533470, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene storkhead box 2 Neighboring gene STARR-seq mESC enhancer starr_21406 Neighboring gene STARR-seq mESC enhancer starr_21407 Neighboring gene predicted gene, 39171 Neighboring gene STARR-seq mESC enhancer starr_21409 Neighboring gene predicted gene, 22857 Neighboring gene STARR-positive B cell enhancer ABC_E1754 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:48619048-48619157 Neighboring gene RWD domain containing 4A Neighboring gene predicted gene, 39172

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
part_of TRAPP complex ISO
Inferred from Sequence Orthology
more info
 
part_of TRAPPIII protein complex NAS
Non-traceable Author Statement
more info
PubMed 
located_in cytoplasm NAS
Non-traceable Author Statement
more info
PubMed 

General protein information

Preferred Names
trafficking protein particle complex subunit 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177240.3NP_796214.2  trafficking protein particle complex subunit 11

    See identical proteins and their annotated locations for NP_796214.2

    Status: VALIDATED

    Source sequence(s)
    AK042816, AK083445, BC063065, BF471544, BY713400
    Consensus CDS
    CCDS22296.1
    UniProtKB/Swiss-Prot
    B2RXC1, B9EJS1, Q52KP8, Q8BXY8
    Related
    ENSMUSP00000047562.9, ENSMUST00000039061.15
    Conserved Domains (2) summary
    pfam11817
    Location:263522
    Foie-gras_1; Foie gras liver health family 1
    pfam12742
    Location:10361095
    Gryzun-like; Gryzun, putative Golgi trafficking

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    47943163..47986505 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)