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H3c10 H3 clustered histone 10 [ Mus musculus (house mouse) ]

Gene ID: 319152, updated on 2-Nov-2024

Summary

Official Symbol
H3c10provided by MGI
Official Full Name
H3 clustered histone 10provided by MGI
Primary source
MGI:MGI:2448349
See related
Ensembl:ENSMUSG00000101355 AllianceGenome:MGI:2448349
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
H3c1; H3c8; H3c11; H3-291; Hist1h3h
Summary
Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H3 family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. [provided by RefSeq, Aug 2015]
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Genomic context

See H3c10 in Genome Data Viewer
Location:
13 A3.1; 13 7.94 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (21901798..21902285)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (21717628..21718115)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr13:21808027-21808328 Neighboring gene H2B clustered histone 13 Neighboring gene H2A clustered histone 13 Neighboring gene STARR-positive B cell enhancer mm9_chr13:21809194-21809494 Neighboring gene H2A clustered histone 14, pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E261 Neighboring gene H2B clustered histone 14

Genomic regions, transcripts, and products

General gene information

Markers

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
part_of nucleosome ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
part_of protein-containing complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
histone H3.1
Names
histone 1, H3h
histone cluster 1, H3h

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178206.2NP_835513.1  histone H3.1

    See identical proteins and their annotated locations for NP_835513.1

    Status: REVIEWED

    Source sequence(s)
    AL589651
    Consensus CDS
    CCDS26289.1
    UniProtKB/Swiss-Prot
    P68433, Q05A97, Q3B7Z8, Q3B7Z9, Q5T009
    UniProtKB/TrEMBL
    A1L0V4
    Related
    ENSMUSP00000140394.2, ENSMUST00000188775.2
    Conserved Domains (1) summary
    PTZ00018
    Location:1136
    PTZ00018; histone H3; Provisional

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    21901798..21902285
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)