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Rtp2 receptor (chemosensory) transporter protein 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 303835, updated on 17-Aug-2024

Summary

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Official Symbol
Rtp2provided by RGD
Official Full Name
receptor (chemosensory) transporter protein 2provided by RGD
Primary source
RGD:1565722
See related
EnsemblRapid:ENSRNOG00000022160 AllianceGenome:RGD:1565722
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565722
Summary
Predicted to enable olfactory receptor binding activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of bitter taste; protein insertion into membrane; and protein targeting to membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface. Orthologous to human RTP2 (receptor transporter protein 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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Location:
11q23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (90422553..90436684)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (76917904..76930760)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (80319177..80331599)

Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120095689 Neighboring gene BCL6, transcription repressor Neighboring gene uncharacterized LOC134481024 Neighboring gene somatostatin Neighboring gene uncharacterized LOC134480929

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. RTP family members induce functional expression of mammalian odorant receptors. Saito H, et al. Cell, 2004 Nov 24. PMID 15550249
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables olfactory receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables olfactory receptor binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in detection of chemical stimulus involved in sensory perception of bitter taste IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein insertion into membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein insertion into membrane ISO
Inferred from Sequence Orthology
more info
  
involved_in protein targeting to membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cell surface IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cell surface ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
receptor-transporting protein 2
Names
receptor transporter protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107083.2 → NP_001100553.1  receptor-transporting protein 2

    See identical proteins and their annotated locations for NP_001100553.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000011
    UniProtKB/TrEMBL
    A6JS11, D3ZCW1
    Related
    ENSRNOP00000036068.4, ENSRNOT00000036777.6
    Conserved Domains (1) summary
    pfam13695
    Location:51 → 161
    zf-3CxxC; Zinc-binding domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086029.1 Reference GRCr8

    Range
    90422553..90436684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039088296.2 → XP_038944224.1  receptor-transporting protein 2 isoform X1

    UniProtKB/TrEMBL
    A6JS11, D3ZCW1
    Conserved Domains (1) summary
    pfam13695
    Location:51 → 161
    zf-3CxxC; Zinc-binding domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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