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C10h17orf75 similar to human chromosome 17 open reading frame 75 [ Rattus norvegicus (Norway rat) ]

Gene ID: 303764, updated on 17-Aug-2024

Summary

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Official Symbol
C10h17orf75provided by RGD
Official Full Name
similar to human chromosome 17 open reading frame 75provided by RGD
Primary source
RGD:1310429
See related
AllianceGenome:RGD:1310429
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310429
Summary
Predicted to be involved in intracellular protein transport and vesicle tethering to Golgi. Predicted to be located in cytoplasmic vesicle. Predicted to be active in trans-Golgi network. Orthologous to human C17orf75 (chromosome 17 open reading frame 75). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 117.4), Muscle (RPKM 109.1) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
10q26
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (65855926..65871711, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (65360924..65373864, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (67738131..67751049, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 135 Neighboring gene ras homolog family member T1 Neighboring gene rhomboid like 3 Neighboring gene microRNA 632 Neighboring gene zinc finger protein 207 Neighboring gene proteasome 26S subunit, non-ATPase 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The WDR11 complex facilitates the tethering of AP-1-derived vesicles. Navarro Negredo P, et al. Nat Commun, 2018 Feb 9. PMID 29426865, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in intracellular protein transport ISO
Inferred from Sequence Orthology
more info
  
involved_in vesicle tethering to Golgi IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in vesicle tethering to Golgi ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasmic vesicle ISO
Inferred from Sequence Orthology
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
is_active_in trans-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in trans-Golgi network ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
protein Njmu-R1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001139506.2 → NP_001132978.1  protein Njmu-R1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000010
    UniProtKB/TrEMBL
    A0A8I6A492, D3ZEJ9
    Conserved Domains (1) summary
    pfam15053
    Location:46 → 390
    Njmu-R1; Mjmu-R1-like protein family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    65855926..65871711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063269254.1 → XP_063125324.1  protein Njmu-R1 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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