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C17orf75 chromosome 17 open reading frame 75 [ Homo sapiens (human) ]

Gene ID: 64149, updated on 6-Dec-2020

Summary

Official Symbol
C17orf75provided by HGNC
Official Full Name
chromosome 17 open reading frame 75provided by HGNC
Primary source
HGNC:HGNC:30173
See related
Ensembl:ENSG00000108666
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SRI2; NJMU-R1
Expression
Ubiquitous expression in testis (RPKM 4.3), thyroid (RPKM 4.1) and 25 other tissues See more
Orthologs
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Genomic context

See C17orf75 in Genome Data Viewer
Location:
17q11.2
Exon count:
12
Annotation release Status Assembly Chr Location
109.20201120 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (32328441..32350049, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (30655460..30677066, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371731 Neighboring gene uncharacterized LOC105371732 Neighboring gene rhomboid like 3 Neighboring gene oocyte secreted protein 1 pseudogene 2 Neighboring gene microRNA 632 Neighboring gene zinc finger protein 207 Neighboring gene nudix hydrolase 15 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
intracellular protein transport IDA
Inferred from Direct Assay
more info
PubMed 
vesicle tethering to Golgi IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
vesicle tethering to Golgi IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
cytoplasmic vesicle IDA
Inferred from Direct Assay
more info
PubMed 
trans-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
trans-Golgi network IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
protein Njmu-R1
Names
sensitization to ricin complex subunit 2
spermatogenesis-related protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_022344.4NP_071739.2  protein Njmu-R1

    See identical proteins and their annotated locations for NP_071739.2

    Status: VALIDATED

    Source sequence(s)
    AC005899, BC026017, BP308900, CA444740
    Consensus CDS
    CCDS58537.1
    UniProtKB/Swiss-Prot
    Q9HAS0
    Related
    ENSP00000464275.1, ENST00000577809.6
    Conserved Domains (1) summary
    pfam15053
    Location:46390
    Njmu-R1; Mjmu-R1-like protein family

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20201120

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    32328441..32350049 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005258022.4XP_005258079.1  protein Njmu-R1 isoform X1

    Conserved Domains (1) summary
    pfam15053
    Location:38382
    Njmu-R1; Mjmu-R1-like protein family
  2. XM_017024941.2XP_016880430.1  protein Njmu-R1 isoform X2

  3. XM_017024940.2XP_016880429.1  protein Njmu-R1 isoform X2

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