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CLE42 CLAVATA3/ESR-RELATED 42 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 28718327, updated on 7-Sep-2023

Summary

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Gene symbol
CLE42
Gene description
CLAVATA3/ESR-RELATED 42
Primary source
Araport:AT2G34925
Locus tag
AT2G34925
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CLAVATA3/ESR-RELATED 42
Summary
Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The protein is expressed in leaf axils and the shoot apical meristem and is involved in axillary bud formation.
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Genomic context

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See CLE42 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (14733975..14734714)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene disease resistance family protein / LRR family protein Neighboring gene VACUOLAR SORTING RECEPTOR 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CLE42 binding induces PXL2 interaction with SERK2. Mou S, et al. Protein Cell, 2017 Aug. PMID 28677102, Free PMC Article
  2. The PXY-CLE41 receptor ligand pair defines a multifunctional pathway that controls the rate and orientation of vascular cell division. Etchells JP, et al. Development, 2010 Mar. PMID 20147378
  3. A novel function of TDIF-related peptides: promotion of axillary bud formation. Yaginuma H, et al. Plant Cell Physiol, 2011 Aug. PMID 21693505
  4. CLAVATA2 forms a distinct CLE-binding receptor complex regulating Arabidopsis stem cell specification. Guo Y, et al. Plant J, 2010 Sep. PMID 20626648, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CLE42 binding induces PXL2 interaction with SERK2.
    Title: CLE42 binding induces PXL2 interaction with SERK2.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_001336535.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables receptor serine/threonine kinase binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within axillary shoot meristem initiation IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within cell division IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in cell-cell signaling involved in cell fate commitment ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within phloem or xylem histogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within secondary shoot formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
CLAVATA3/ESR-RELATED 42
NP_001318356.1
  • CLAVATA3/ESR-RELATED 42 (CLE42); LOCATED IN: endomembrane system; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14733975..14734714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336535.1 → NP_001318356.1  CLAVATA3/ESR-RELATED 42 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6IWB2
    UniProtKB/TrEMBL
    A0A178VY28, A0A5S9X403
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6IWB2.1

Gene LinkOut

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Molecular Biology Databases