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LINC01289 long intergenic non-protein coding RNA 1289 [ Homo sapiens (human) ]

Gene ID: 286184, updated on 10-Oct-2023

Summary

Official Symbol
LINC01289provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1289provided by HGNC
Primary source
HGNC:HGNC:50354
See related
Ensembl:ENSG00000253734 AllianceGenome:HGNC:50354
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
8q12.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (63769430..63785501)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (64194688..64210761)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (64681988..64698058)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene RN7SK pseudogene 135 Neighboring gene uncharacterized LOC124902063 Neighboring gene VISTA enhancer hs1239 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:64599134-64600333 Neighboring gene uncharacterized LOC105375876 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19242 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:64715092-64715687 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:64715688-64716282 Neighboring gene long intergenic non-protein coding RNA 1414 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:64800414-64801158 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:65037341-65037533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:65166509-65167019 Neighboring gene Sharpr-MPRA regulatory region 1423 Neighboring gene uncharacterized LOC105375877 Neighboring gene cytochrome c oxidase subunit 6C pseudogene 8

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038875.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC069133, BC037345, KF458764
    Related
    ENST00000519550.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    63769430..63785501
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    64194688..64210761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)