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TRBV21-1 T cell receptor beta variable 21-1 (pseudogene) [ Homo sapiens (human) ]

Gene ID: 28566, updated on 17-Sep-2024

Summary

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Official Symbol
TRBV21-1provided by HGNC
Official Full Name
T cell receptor beta variable 21-1 (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:12198
See related
Ensembl:ENSG00000251578 IMGT/GENE-DB:TRBV21-1; AllianceGenome:HGNC:12198
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRBV211; TCRBV21S1; TCRBV10S1P
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See TRBV21-1 in Genome Data Viewer
Location:
7q34
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (142636924..142637384)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (143993712..143994172)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (142344427..142344887)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene T cell receptor beta locus Neighboring gene Sharpr-MPRA regulatory region 1556/5446 Neighboring gene T cell receptor beta variable 20-1 Neighboring gene T cell receptor beta variable 19 Neighboring gene T cell receptor beta variable 22-1 (pseudogene) Neighboring gene T cell receptor beta variable 23-1 (non-functional)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of T-cell subpopulations in T-cell non-Hodgkin's lymphoma of angioimmunoblastic lymphadenopathy with dysproteinemia type by single target gene amplification of T cell receptor- beta gene rearrangements. Willenbrock K, et al. Am J Pathol, 2001 May. PMID 11337383, Free PMC Article
  2. Comprehensive analysis of the functional TCR repertoire at the single-cell level. Ozawa T, et al. Biochem Biophys Res Commun, 2008 Mar 21. PMID 18191637
  3. The complete 685-kilobase DNA sequence of the human beta T cell receptor locus. Rowen L, et al. Science, 1996 Jun 21. PMID 8650574
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Markers

Other Names

  • T-cell receptor TRB locus TRBV21-1*01
  • T-cell receptor TRB locus TRBV21-1*01_S6302
  • T-cell receptor TRB locus TRBV21-1*01_S7521
  • T-cell receptor TRB locus TRBV21-1*02
  • TCR chain beta

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_001333.2 

    Range
    471659..472126
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    142636924..142637384
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187562.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    640572..641032
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    143993712..143994172
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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