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C5orf51 chromosome 5 open reading frame 51 [ Homo sapiens (human) ]

Gene ID: 285636, updated on 17-Jun-2019

Summary

Official Symbol
C5orf51provided by HGNC
Official Full Name
chromosome 5 open reading frame 51provided by HGNC
Primary source
HGNC:HGNC:27750
See related
Ensembl:ENSG00000205765
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 9.5), brain (RPKM 9.2) and 25 other tissues See more
Orthologs

Genomic context

See C5orf51 in Genome Data Viewer
Location:
5p13.1
Exon count:
8
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (41904313..41921636)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (41904423..41921738)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene 3-oxoacid CoA-transferase 1 Neighboring gene uncharacterized LOC102723752 Neighboring gene OXCT1 antisense RNA 1 Neighboring gene ribosomal protein S2 pseudogene 22 Neighboring gene zinc finger protein 626 pseudogene Neighboring gene F-box protein 4 Neighboring gene ribosomal protein SA pseudogene 38 Neighboring gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175921.6NP_787117.3  UPF0600 protein C5orf51

    See identical proteins and their annotated locations for NP_787117.3

    Status: VALIDATED

    Source sequence(s)
    AC034222, AL833916, BF439305, BQ272495, CN345108, HY116483
    Consensus CDS
    CCDS34151.1
    UniProtKB/Swiss-Prot
    A6NDU8
    Related
    ENSP00000371061.2, ENST00000381647.7

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    41904313..41921636
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005248289.4XP_005248346.1  UPF0600 protein C5orf51 isoform X2

  2. XM_011514032.2XP_011512334.1  UPF0600 protein C5orf51 isoform X1

RNA

  1. XR_001742054.1 RNA Sequence

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